DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HLH4C and Fer1

DIOPT Version :9

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster


Alignment Length:153 Identity:44/153 - (28%)
Similarity:70/153 - (45%) Gaps:38/153 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDIDKRFQARMACETAAQPAPPPPPTPAPRRR 79
            |.|.|.|:..|:      ::....:||.|.|:..:.|:....:..|             |..||.
  Fly    27 STSSSDYFFGDE------HSSESDDEDDAYSSGFNSDQENTEKTFC-------------PFSRRS 72

  Fly    80 TTPIAHLDPSELVGLSREERRRRRRAT--LKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDK 142
            ..|                 ||.:.|:  .:.|.|...|||.|:::.|.:|..||..:||||.:|
  Fly    73 HKP-----------------RRLKCASQMAQQRQAANLRERRRMQSINEAFEGLRTHIPTLPYEK 120

  Fly   143 KLSKIEILKLAICYIAYLNHVLE 165
            :|||::.|||||.||.:|:.:::
  Fly   121 RLSKVDTLKLAISYITFLSEMVK 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 26/56 (46%)
Fer1NP_001262334.1 HLH 92..144 CDD:197674 24/52 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.