DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Mesp2

DIOPT Version :9

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_032615.2 Gene:Mesp2 / 17293 MGIID:1096325 Length:370 Species:Mus musculus


Alignment Length:131 Identity:38/131 - (29%)
Similarity:57/131 - (43%) Gaps:21/131 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 ACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERRRRRRATLKYRTAHATRERIRVEA 123
            :|...|...|..|..||...|||.            :...||.|.......|.:.:.||::|:..
Mouse    42 SCPCYATRRPSQPAGPARSTRTTQ------------ATAPRRTRPAPAGGQRQSASEREKLRMRT 94

  Fly   124 FNVSFAELRKLLP--TLPPDKKLSKIEILKLAICYIAYLNHVLETPXDS-------AGASSFATS 179
            ...:..|||:.||  ..|..:.|:|||.|:|||.||.:|:.:|....||       :..::|:..
Mouse    95 LARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSALLGLSEDSLRRRRRRSADAAFSHR 159

  Fly   180 C 180
            |
Mouse   160 C 160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 21/58 (36%)
Mesp2NP_032615.2 HLH 80..133 CDD:278439 20/52 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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