DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH4C and Ferd3l

DIOPT Version :9

Sequence 1:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster
Sequence 2:NP_277057.1 Gene:Ferd3l / 114712 MGIID:2150010 Length:168 Species:Mus musculus


Alignment Length:194 Identity:47/194 - (24%)
Similarity:73/194 - (37%) Gaps:68/194 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDIDKRFQARMACETAAQPAPPPPP 72
            |||.|...:..:....|.|..:..|.:|                      :.||.       ||.
Mouse     1 MAAYPESCLDATVLNFVADLSLASPRHP----------------------LLCEF-------PPG 36

  Fly    73 TP-----------APRRRT-----------TPIAHLDPSE-------------LVGLSREERRRR 102
            .|           .|.|.:           ..:.:.||.|             |:|    ..:|:
Mouse    37 VPFGDRTLGYREGRPGRLSQFDERYQEVEGDEVEYEDPEEEEEEGEGRGRVASLLG----RPKRK 97

  Fly   103 RRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEILKLAICYIAYLNHVLET 166
            |..|...|.|...|||.|:...|.:|.:||:.:||...:|:||:||.|:|||.||:::..:|::
Mouse    98 RVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLQS 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 23/56 (41%)
Ferd3lNP_277057.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..88 3/22 (14%)
bHLH domain 104..159 23/54 (43%)
HLH 104..156 CDD:278439 23/51 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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