DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment peb and rreb1b

DIOPT Version :9

Sequence 1:NP_001014722.1 Gene:peb / 31391 FlyBaseID:FBgn0003053 Length:1894 Species:Drosophila melanogaster
Sequence 2:XP_683385.6 Gene:rreb1b / 555701 ZFINID:ZDB-GENE-070912-273 Length:1673 Species:Danio rerio


Alignment Length:1959 Identity:427/1959 - (21%)
Similarity:677/1959 - (34%) Gaps:688/1959 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 NHHQQQQHHQQSDLLSDEDVAEAEAEEDEDEEDGDQVAALGSRNLGRHKQRRSGGATTQASIVMD 140
            :|..::..:.||...:.|.|.||:.:|.:...|.|:|                 |..|:..:.  
Zfish    25 SHLSEEAVNSQSSTCTPEPVEEADFDETDKAADEDEV-----------------GVRTEEELT-- 70

  Fly   141 YSSGDASSLRKKFRLNRSAASLSESGFVDASSTTGHSGYLGNSSSATNTTATSGIGASAVAPSPV 205
                             |..|:                    .|:..|....:|:.:.....|| 
Zfish    71 -----------------SINSM--------------------MSTVMNVGQINGVDSETPKTSP- 97

  Fly   206 GGAAINAASSSSGSSSGGSGGSSPQGQCLSSGESGIGAGDEHMKYLCPICEVVSATPHEFTNHIR 270
                   .:::...|:|.:|..:.:            ..||...::||:|:....|.|:.|.|||
Zfish    98 -------RNTNKSPSAGRTGRRNQE------------VKDERSSFICPLCDKNCMTQHQLTMHIR 143

  Fly   271 CHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTH--- 332
            .||..:|.|:: :|.||.|.||||||||||:|||:||||:.|..|..||||||||||||:.|   
Zfish   144 QHNTDSGGTDH-SCSICGKALSSASSLDRHMLVHSGERPYKCSVCGQTFTTNGNMHRHMKIHEKD 207

  Fly   333 -------------KQHQVAQSQSQSQQQQS-------------LQQQQQSQQQRRQQQ------- 364
                         |:.:::..:..|.:.:.             :|:.::....:.:::       
Zfish   208 SSGIPTPSSSPLNKRRRLSSKRKPSVEDEGEQAEEPPVKKVTLIQKLKEDNSVKSEEEVFHCPIC 272

  Fly   365 ----------------------------------------------------------QHQPS-- 369
                                                                      |:.||  
Zfish   273 FKTFICKNDLEAHMETHPDTTLRCNICCITFRKHRGLLRHNAAIHKQLPTDPSGRPFIQNNPSIP 337

  Fly   370 -----------QQQQNPAQQQLMGNTLSARAES----------------------YESDASCSTD 401
                       ..|:.|...|:...|...|..|                      ::|..:||.|
Zfish   338 LGFGDLAFIDFSCQKFPQIAQVWCETNLRRCSSKFHKFVCEDCNKAFPIQQSLDLHKSSHNCSVD 402

  Fly   402 VSSGHSHSRSSSSLNNNNNNSHKANNNLKDLEEL--EVSTEDQDTENKQRRLKTTINNNIIESEQ 464
            .|:.....::.:.::....|||..::  |::.||  .|.|...|.:|.........::::.:.|:
Zfish   403 TSTDPQEHKADAVIDAPKVNSHSEDS--KEVSELAPHVDTTSSDGKNGFMERLGLQHSSLAKLEK 465

  Fly   465 QEDMDDEEADDADVAMLTSTPDVATLLAGASAS-GAASRSPTPSPSASPALLLSCPACGASDFET 528
            .|:...:|..|: :..:...|....|....|.| |.:...|     .|...:....|.|....:.
Zfish   466 SEEQIQQEVLDS-IRFIRVEPPSTNLPQETSGSLGVSILEP-----VSLQAMNKNTALGLLSLQP 524

  Fly   529 LPALCVH--LDAMHSDIPAKCRDCEVIFATHRQLQSHCCRLPNALAGGLPPLLGASSSPLHNEEP 591
            |.|:..:  ...:......:..|.|.|.               .:|..:||.:..|..|.....|
Zfish   525 LHAVVSNGMFVPISGQTAVELADIEQIL---------------KIATSVPPQMSLSMLPKSLGSP 574

  Fly   592 EDEEHGDDEDLEQKERLASQSEDFFHQLYLKHKTANGCGAISHPPSPIKHEPADTKDLADI---- 652
            ...:......|:.|..:..:|               ..||.:.||..:..:.|.:.:::..    
Zfish   575 LQVDPRQISSLKPKSLITPRS---------------SMGASTPPPPVMNAQQASSGNISPSLPPQ 624

  Fly   653 ---------QSILNMTSSSSSFLRNFEQSVNTPNSSQYSLD--GR---DQEEEAQDAFTSEFRRM 703
                     ||..:.:||:||...|:|       ::|...|  |.   ..|...|:.|.|:.:.|
Zfish   625 TGQQVRTARQSSASSSSSTSSSPTNWE-------TTQLGSDVIGNTIISYETGKQEEFDSKEKDM 682

  Fly   704 KL------RGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRT 762
            ::      :.|:||:.|..||..|..|:.|.|.|||    |.|::|.:|.||..|||.|:||:||
Zfish   683 RVVPKKTAKTEYPCRFCKEVFSFLGGLQAHMRHHLG----ASPYQCTICSYAAPDKATLIRHLRT 743

  Fly   763 HNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDAGCEDSKSRLGEDLAD 827
            |:|:|||.|.:|:|.||.|||||||||.:|.|.:|:::::.|.|                    .
Zfish   744 HSGERPYVCRLCHYPFTVKANCERHLRKKHMKNTRKDIEKNIEY--------------------V 788

  Fly   828 TSFRSISPTPPPPPVNESKSQLKHMLLGENHLAPVNQQPPLKIQVKSLDQLVDKKPSAPAPQQQQ 892
            |:..|||                 .::|                                     
Zfish   789 TTSSSIS-----------------SVIG------------------------------------- 799

  Fly   893 QQQQQEKSGSALDFSMDVLDLSKKPTGGASLTPAVTRTPTPAAVAPVTPGGVGTPDLAAAIEQQQ 957
                    |:.|    |:||.:.  .|..|....                               
Zfish   800 --------GTTL----DLLDTTN--AGNTSCRYC------------------------------- 819

  Fly   958 LLLAQQQLFGAGGEYMQQLFRSLMFQSQTSGFPFFPFMAPPPPQANPEKPPMVSPPNRINPMPVG 1022
                        ||.::. :|:|....:|                                    
Zfish   820 ------------GEDLKN-YRALQIHLRT------------------------------------ 835

  Fly  1023 VGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYA 1087
                             .||.    ||       :||.|..|.|.|..:.|...|:.:.||. ..
Zfish   836 -----------------HNGC----QK-------KPFECRQCGATFLAKRNCIHHLLKHHPD-VP 871

  Fly  1088 QRQRSGH--HVMRGRGASNVAAAAAAAAAAAAATVMAGGPGSSGFGSNHHHGHGHGSHGSHGHAP 1150
            :|:...|  .::...|..|..:..:|......:::.......||                    |
Zfish   872 EREIEEHIKSLVPVGGEVNAQSNTSATNGLVNSSISQNVGTFSG--------------------P 916

  Fly  1151 ISEQVKCAILAQQLKAHKNTDLLQQALAHGSSSVAGNPLLHFGYPLTNPSPMHNGSSQGNGQATA 1215
            :.||                   :|.|...|.|           ..|.||.:     :..|.|:.
Zfish   917 VEEQ-------------------EQPLDFSSKS-----------QKTMPSVV-----KIEGAASP 946

  Fly  1216 MDDD---EP-KLIIDEDENEHDHEVEAEDVDDFEEDEDEEEMDE--------PEDEPEL--ILDE 1266
            :.:|   || .|.|.:|..:  .::..|...:::|...|:..:.        |...|.|  :|..
Zfish   947 LLNDCSMEPIDLSIPKDPEK--KKMRKEVPQNYQELNKEKTSETAPGLLAAIPVSIPSLASVLSS 1009

  Fly  1267 QPAEKEAEEEQELPKPLEQLGTKEAA--QKMAETI---------LEQAIKAGKPLSPPPTK---E 1317
            ...:.....:..||||.....|.|.|  ..:|:.|         :|..:.|...:|....|   |
Zfish  1010 DITKPYTRLKPLLPKPSSASSTAEMAPLASIAQIISSVSATPVLIETGMDAKNCISAVDFKTLSE 1074

  Fly  1318 NASPANPTVATTMQEPAIT-APSTNPSSLKTMIAQAEYVGKSLKEVASSPFKDESQDLVPVAKLV 1381
            |.||    :.||..:..:. :|..:....|..:.|.| :..|...|.|....:.|.:...|.|::
Zfish  1075 NKSP----IGTTKLDSVLNGSPDNSKKRGKKRVFQEE-ICDSRIAVGSGIDLESSGEFPSVEKML 1134

  Fly  1382 DNATSQNMGFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSSEPK------- 1439
              ||:....|:.|.:|:.:...||:.:::      ||.|......||        :||       
Zfish  1135 --ATTDANKFSPYLQPNQMEPMMEEKEKQ------SADEEVKEIRED--------KPKKPPQNKG 1183

  Fly  1440 KKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKH-- 1502
            ||:|||.:..:::||||.|:|||:|||:||:||||||||:.|..|...|:|||||:|||||||  
Zfish  1184 KKNAYSNSVQKMTCPYCPRLFPWASSLQRHMLTHTGQKPYPCPQCDSFFSTKSNCERHLLRKHGV 1248

  Fly  1503 ---------------------GNVESAMSVYVP----TEDVSEPIPVPKSVEEIELEEQRRRQEA 1542
                                 |:.||......|    |.|:|.   |....||.....:|..|.|
Zfish  1249 SNRALQNSGSRLKPKTDEESLGSTESVCDTEHPVAEGTMDLSS---VNTKQEESPEAPERTGQSA 1310

  Fly  1543 EREKELELERERELERERELERERQLEKEKERERQQLIQKLAAQMNAAATAAAVVAAASAVNGGA 1607
            ..:.:...:..:....|   |....:||:.:.:.......::.:|:..:.....|..:......:
Zfish  1311 PEQADSSTDPNQTQPAE---ENPEMVEKDDDDDDDDSQSSMSHEMSLVSNLVVDVQLSGEEQHQS 1372

  Fly  1608 SGGPHGPIADALAGGD-LPYKCHLCEGSFAERLQCLEHIKQAHAHEYALLLAKGAIE--TESLEA 1669
            ...|     :.::..| .|:.|..|:.:|........|.|   .|...:....||.:  .::...
Zfish  1373 KSAP-----EVVSPPDEFPHTCASCKKTFRHAATLSRHQK---THLQEVQPEDGAKKGRRQAPPQ 1429

  Fly  1670 NPHQQPS----QQAVHSDD----------------------------EAPN---------GGGNR 1693
            ||...||    |.|...||                            |.|:         |...|
Zfish  1430 NPIPVPSKEMEQDAKSEDDEKEENSSCVESGVDEEEKEREDMSEDEEETPSSELQALEEEGNSTR 1494

  Fly  1694 GKYPDYSNRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRA 1758
            ||   ...||.||..|.:||||.:||.||||:|:||||::|..|.|.||||||::||.:.|.   
Zfish  1495 GK---ADKRKKICTVCSKRFWSLQDLTRHMRSHTGERPYKCQTCHRTFTLKHSLVRHQRVHQ--- 1553

  Fly  1759 HNGDTPGSD 1767
            ...|..|||
Zfish  1554 KPSDEKGSD 1562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pebNP_001014722.1 C2H2 Zn finger 252..272 CDD:275368 9/19 (47%)
C2H2 Zn finger 284..304 CDD:275368 15/19 (79%)
zf-H2C2_2 296..321 CDD:290200 16/24 (67%)
C2H2 Zn finger 312..332 CDD:275368 14/19 (74%)
C2H2 Zn finger 711..731 CDD:275368 8/19 (42%)
C2H2 Zn finger 743..763 CDD:275368 11/19 (58%)
zf-H2C2_2 755..780 CDD:290200 14/24 (58%)
C2H2 Zn finger 771..789 CDD:275368 12/17 (71%)
C2H2 Zn finger 1061..1079 CDD:275368 6/17 (35%)
PopZ 1299..>1430 CDD:226348 33/143 (23%)
C2H2 Zn finger 1453..1473 CDD:275370 14/19 (74%)
zf-H2C2_2 1465..1490 CDD:290200 15/24 (63%)
C2H2 Zn finger 1481..1502 CDD:275370 13/20 (65%)
C2H2 Zn finger 1706..1726 CDD:275368 12/19 (63%)
zf-H2C2_2 1718..1742 CDD:290200 14/23 (61%)
C2H2 Zn finger 1734..1754 CDD:275368 11/19 (58%)
rreb1bXP_683385.6 C2H2 Zn finger 125..145 CDD:275368 9/19 (47%)
C2H2 Zn finger 156..176 CDD:275368 15/19 (79%)
zf-H2C2_2 168..193 CDD:290200 16/24 (67%)
C2H2 Zn finger 184..204 CDD:275368 14/19 (74%)
zf-C2H2_8 <262..312 CDD:292531 0/49 (0%)
zf-C2H2_4 267..289 CDD:290605 0/21 (0%)
C2H2 Zn finger 269..289 CDD:275368 0/19 (0%)
C2H2 Zn finger 296..312 CDD:275368 0/15 (0%)
C2H2 Zn finger 696..716 CDD:275368 8/19 (42%)
C2H2 Zn finger 724..744 CDD:275368 11/19 (58%)
zf-H2C2_2 737..760 CDD:290200 13/22 (59%)
C2H2 Zn finger 752..770 CDD:275368 12/17 (71%)
C2H2 Zn finger 846..866 CDD:275368 6/19 (32%)
C2H2 Zn finger 1197..1217 CDD:275368 14/19 (74%)
zf-H2C2_2 1209..1234 CDD:290200 15/24 (63%)
C2H2 Zn finger 1225..1246 CDD:275368 13/20 (65%)
C2H2 Zn finger 1389..1409 CDD:275368 5/22 (23%)
C2H2 Zn finger 1504..1524 CDD:275368 12/19 (63%)
zf-H2C2_2 1516..1540 CDD:290200 14/23 (61%)
zf-C2H2 1530..1552 CDD:278523 11/21 (52%)
C2H2 Zn finger 1532..1552 CDD:275368 11/19 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595192
Domainoid 1 1.000 46 1.000 Domainoid score I12118
eggNOG 1 0.900 - - E33208_3BETZ
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 347 1.000 Inparanoid score I2273
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D24048at33208
OrthoFinder 1 1.000 - - FOG0007124
OrthoInspector 1 1.000 - - otm24236
orthoMCL 1 0.900 - - OOG6_108574
Panther 1 1.100 - - O PTHR46451
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5213
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.850

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