DRSC/TRiP Functional Genomics Resources

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Protein Alignment peb and rreb1a

DIOPT Version :10

Sequence 1:NP_476674.3 Gene:peb / 31391 FlyBaseID:FBgn0003053 Length:1894 Species:Drosophila melanogaster
Sequence 2:XP_002666628.3 Gene:rreb1a / 338237 ZFINID:ZDB-GENE-030219-137 Length:1689 Species:Danio rerio


Alignment Length:2112 Identity:477/2112 - (22%)
Similarity:759/2112 - (35%) Gaps:707/2112 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SSRKR----KIRHLQLNHHQQQQHHQQSDLLSDEDVAEAEAEEDEDEEDGDQVAALGSRNLGRHK 124
            |.||:    |::.::.:..:.:.......|..:|     |||:.::                   
Zfish     2 SRRKQPNPNKVKPMENSAEEARTESANCSLTGEE-----EAEQSDE------------------- 42

  Fly   125 QRRSGGATTQASIVMDYSSGDASSLRK--KFRLNRSAASLSESGFVDASSTTGHSGYLGNSSSAT 187
              |...|.|:|     ::.|.|....:  :::..|:.|. .|...||....|       :.:|..
Zfish    43 --RQSPAPTEA-----HTEGSAGVEEEGNEWKNGRNEAD-GEMEAVDGVDLT-------SINSMM 92

  Fly   188 NTTATSGIGASAVAPSPVGGAAINAASSSSGSSSGGSGGSSPQGQCLSSGESGIGAGDEHMKYLC 252
            ||.              :..|.:|....|:.|:.......||...  .||.....|.||.....|
Zfish    93 NTV--------------MKAAQLNGGVDSAHSTPNKVPAKSPGTN--RSGRKSQEAKDESGCIAC 141

  Fly   253 PICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHL 317
            |:|:......|:.|.|||.||..:| |.:.:|.||.|.||||||||||:|||:||||:.|..||.
Zfish   142 PLCDKGFQNQHQLTMHIRQHNTDSG-TSDHSCSICGKSLSSASSLDRHMLVHSGERPYKCTVCHQ 205

  Fly   318 TFTTNGNMHRHMRTHKQHQVAQ-----SQSQSQQQQSLQQQQQSQQQRRQQQQHQPS-------- 369
            ||||||||||||:.|::...:.     :.|.:::::|...:::..|....::..:||        
Zfish   206 TFTTNGNMHRHMKIHEKDSASSIPNSPTLSPTKRRRSSTAKRKLSQDEDCEKTEEPSSKKVLEDS 270

  Fly   370 ---QQQQNPAQQQLMGNTLSARAESYESDASCSTDVSSG---HSHS-----------RSSSSLNN 417
               :|..|..|.:|:  |.|...:::    :|..|..:.   |..:           |:..||..
Zfish   271 GADEQGSNKGQDELL--TCSICFKNF----TCKNDYDTHMEIHPDTTLRCDLCCVSFRTPRSLLR 329

  Fly   418 NNNNSHK------------ANN-----NLKDLEELEVS--------------------------- 438
            :|..:||            .||     ...||..::.|                           
Zfish   330 HNAATHKQLPTDPSGRPFIQNNPSIPLGFNDLAFIDFSCLKFPRIAQIWCETNLRRCTGKFHRFV 394

  Fly   439 ------------------TEDQDTENKQRRLKTTINNNIIESEQQEDMD---------------D 470
                              ...:::...|......:..:.:.:::...||               :
Zfish   395 CDSCDKAFPLSSALDLHKASHEESSGTQETTSPLVEKDELPNDKSSFMDFLGLQHISQVKPAPSE 459

  Fly   471 EEADDA---DVAMLTSTPDVATLLAGASASGAASRS---PTP--SPSASPAL-LLSCPACGASDF 526
            |:|..|   .:.::...|:.:|:.......|:.:.|   ||.  ..|...|| |||     ...|
Zfish   460 EDALQAKLDSIRVIHVEPNQSTVPQEPGLVGSVNLSLVDPTTLHGLSHQEALKLLS-----LQPF 519

  Fly   527 ETLPALCVHLDAMHSDIPAKCRDCEVIFATHRQLQSHCCRLPNALAGGLPPLLGASSSPL----- 586
            :|  ...|..|......|. |.|.....|..:|:.......||.:|  ||||   |.:|.     
Zfish   520 QT--GFLVQPDGGMVVKPV-CGDTSTELADIQQILKVASAAPNQIA--LPPL---SKAPCSTGQS 576

  Fly   587 -HNEEPEDEEHGDDEDLEQKERLASQSEDFFH---QLYLKHKTANGCGAISHPPSPIKHEPADTK 647
             :.:.|         .|:.|..:|.::.....   .|....:.:.||.:.|.|| |..|.....:
Zfish   577 GYKQMP---------PLKPKPLVAPRTSMVASTPPPLLNTQQASLGCISPSLPP-PASHPIKVAR 631

  Fly   648 DLADIQSILNMTSSSSSFLRNFEQS------------VNTPNSSQYSLDGRD-QEEEAQDAFTSE 699
            :        |.:|||||...|...:            .:||    ..:|.|. ::|.::...|:.
Zfish   632 E--------NSSSSSSSSASNQASAERIQMEAECMGDAHTP----MDMDERHIKQENSKLEETTG 684

  Fly   700 FRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHN 764
            .:....:|.:||:.|..||.....|:.|.|.|||.:    |.:||:|.|...|||.|:||:|||:
Zfish   685 KKGTSQKGSYPCRFCDQVFAFSGVLQAHMRYHLGVL----PHQCNICDYVAPDKATLIRHLRTHS 745

  Fly   765 GDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVY--------HPAEDAGCEDSKSRL 821
            |:|||.|.:|.|.||.|||||||||.:|.|:||:|:::.|.|        ...|.||..::..|.
Zfish   746 GERPYVCRLCLYPFTVKANCERHLRKKHMKSSRKEIEKNIKYVTSSTSTSDVVEQAGTSETTCRF 810

  Fly   822 -GEDLADTSFRSISPTPPPPPVNESKSQLKHMLLGENHLAPVN--QQPPLKIQVKSLDQLVDKKP 883
             ||||  .:||::                      :.||...|  |:.|.:.:......|..:..
Zfish   811 CGEDL--KTFRAL----------------------QIHLRTHNGCQRKPFECKRCGAAFLAKRNC 851

  Fly   884 SAPAPQQQQQQQQQEKSGSALDFSMDVLDLSKKPTGGASLTPAVTRTPTPAAVAPVTPGGVGTPD 948
            .....:|..:.|:|       |....::.|         |.|:...:|:|:.:     .||.|.:
Zfish   852 IHHLLKQHPEVQEQ-------DIEDHIITL---------LAPSSQNSPSPSPL-----NGVPTNN 895

  Fly   949 LAAAIEQQQLLLAQQQLFGAGGEYMQQLFRSLMFQSQTSGFPFFPFMAPPPPQANPEKPPMV--S 1011
            :...|:.:.|..           |...:.:.|.|.:::.|             ||......|  |
Zfish   896 VVQPIKVEDLSF-----------YTVDMDQPLDFSNKSRG-------------ANNNNAGSVSGS 936

  Fly  1012 PPNRINPM-------PVGVGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFT 1069
            |..:|.|:       |:.:.:     |..|:|          |.||                  .
Zfish   937 PAIKIEPVSFDSSMEPIDLSI-----PKNPMK----------KLKQ------------------D 968

  Fly  1070 LRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNVAAAAAAAAAAAAATVMAGGPGSSGFGSNH 1134
            :.:.:.|.||::                                           |.|       
Zfish   969 IEAALPRAVKKE-------------------------------------------PSS------- 983

  Fly  1135 HHGHGHGSHGSHGHAPISEQVKCAILAQQLKAHKNTDLLQQALA-----------HGSSSVAGNP 1188
                                  .:|||:.|:|.|:.|...|.|.           .||:|.||.|
Zfish   984 ----------------------VSILAKALQADKSIDEKCQPLGCYQVPVALTSLTGSTSAAGRP 1026

  Fly  1189 LLHFGYPLTNPSPMHNGSSQ-----GNGQATAMDDDEPKLIIDEDENEHDHEVEAEDVDDFEEDE 1248
            |..  .||. |.|...|..:     ...|..:.....|.|:..::.|....:::.          
Zfish  1027 LRL--KPLL-PKPSSAGVKELPPLASIAQIISSVSGAPDLLKRDNTNSLKTDIDT---------- 1078

  Fly  1249 DEEEMDEPEDEPELILDEQPAEKEAEEEQELPKPLEQLGTKEAAQKMAETILEQAIKAGKPLSPP 1313
                               ||      :||.|:.|::..:.|.::|.                  
Zfish  1079 -------------------PA------KQESPETLKEELSVEISKKR------------------ 1100

  Fly  1314 PTKENASPANPTVATTMQEPAITAPSTNPSSLKTMIAQAEYVGKSLKEVASSPFKDESQDLVPVA 1378
             |::..|.......|.|..|.::..                             .:.|.:...|.
Zfish  1101 -TRKRPSNGIAKEKTVMNAPDLSID-----------------------------LESSGEFASVE 1135

  Fly  1379 KLVDNATSQNMGFNSYFRPSDV------------ANHMEQSDEEGLVASGSASESNNSGTEDVTS 1431
            :::.|..:..  |::|.:.:.:            .:..|..||:.|....:..:|..        
Zfish  1136 RMLANTDANK--FSAYLQTNTIELARKGRQQPGAGDEKEMKDEKHLPVQQTVQQSKG-------- 1190

  Fly  1432 SSSSSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDR 1496
                    ||:|||.:..::.||:|.|:|||:|||:||:||||||||:.|..|...|:|||||:|
Zfish  1191 --------KKNAYSNSVQKMICPFCPRVFPWASSLQRHMLTHTGQKPYPCPQCDAFFSTKSNCER 1247

  Fly  1497 HLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQEAE-------------REKEL 1548
            |||||||.....:.       .:..||.||..|:...|......|||             .||.:
Zfish  1248 HLLRKHGISNRVLR-------RNGVIPKPKDAEDGSPESADSTSEAELPMGEAMDLTSSDPEKSV 1305

  Fly  1549 ELERER-----------------ELERERELERERQLEKEKERERQQLIQKLAAQMNAAATA-AA 1595
            ..:.|:                 :.:.:..||..:..:.|.|.:          .:|:..|. ..
Zfish  1306 ASDAEKPSPAKPTEAAVVEPLPQKEDDKTSLESLKHNDTEIEDD----------HLNSNKTLDLT 1360

  Fly  1596 VVAAASAVNGGASGGPH-GPIAD------ALAGGDLPYKCHLCEGSFAERLQCLEHIKQAHAHEY 1653
            .|:.|..||......|. .|:||      |.|..:....|.:|:.||       .::|....||.
Zfish  1361 FVSKAKDVNITEKEQPQSSPVADEEISDKAKAHEESKLTCKICKKSF-------RYVKTLTRHEK 1418

  Fly  1654 ALLL-------------------------------------AKGAIETES----LEANPHQQPSQ 1677
            |..|                                     .||..|||.    :|:.|.:...:
Zfish  1419 AHQLDMTQDAGVTNGQNLTKSDDPIVPCEKKEVTEEEVESVRKGKAETEGNGSVVESGPDEDKEE 1483

  Fly  1678 QAVHSDDEAP-----NGGGNRGKYPDYSNRKVICAFCLRRFWSTEDLRRHMRTHSGERPFQCDIC 1737
            :   ||:|.|     :.|...|..||  .||.:|:.|.:||||.:||.||||:|:||||::|..|
Zfish  1484 R---SDEEEPATEPKSAGREPGSKPD--KRKKVCSICNKRFWSLQDLTRHMRSHTGERPYKCQTC 1543

  Fly  1738 LRKFTLKHSMLRHMKKHSGRAHNGDTPGSDC-----SDDEQVSSPPSTPHPTQPTSANNNNSCHN 1797
            .|.||||||::||.:.|. :....|:.||.|     :|:|..|...::.....|||.|..:  .|
Zfish  1544 ERTFTLKHSLVRHQRIHQ-KLRGVDSDGSTCGAAGGADEEGFSGRSASESECTPTSTNPPS--EN 1605

  Fly  1798 NNNNANNNNNNNNNNNNNNSSSKLGLKLHDLLDKASEWRASRLGEHKENMGEATPSGATVAGSD- 1861
            .:...:.......:..|..:::           .|.|:..|...|......:.||:..:.|.|: 
Zfish  1606 ESEMTDTVKGEPTSYVNKGAAA-----------DAEEYNLSSETEPAAETPKETPAEDSPATSEP 1659

  Fly  1862 -LIGNLLGISDQGILNKLLSSADEAAKLLGVD 1892
             .|..||.|..:.....:|.:::.|  ||||:
Zfish  1660 GFIQGLLEIHTKPTTEHILPTSEPA--LLGVE 1689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pebNP_476674.3 C2H2 Zn finger 252..272 CDD:275368 8/19 (42%)
C2H2 Zn finger 284..304 CDD:275368 15/19 (79%)
zf-H2C2_2 296..321 CDD:463886 17/24 (71%)
C2H2 Zn finger 312..332 CDD:275368 15/19 (79%)
C2H2 Zn finger 711..731 CDD:275368 7/19 (37%)
C2H2 Zn finger 743..763 CDD:275368 11/19 (58%)
zf-H2C2_2 755..780 CDD:463886 14/24 (58%)
C2H2 Zn finger 771..789 CDD:275368 12/17 (71%)
C2H2 Zn finger 1453..1473 CDD:275370 13/19 (68%)
zf-H2C2_2 1465..1490 CDD:463886 15/24 (63%)
C2H2 Zn finger 1481..1502 CDD:275370 13/20 (65%)
C2H2 Zn finger 1706..1726 CDD:275368 12/19 (63%)
zf-H2C2_2 1718..1742 CDD:463886 14/23 (61%)
C2H2 Zn finger 1734..1754 CDD:275368 11/19 (58%)
rreb1aXP_002666628.3 COG5048 <100..327 CDD:227381 74/235 (31%)
C2H2 Zn finger 141..161 CDD:275368 8/19 (42%)
C2H2 Zn finger 172..192 CDD:275368 15/19 (79%)
zf-H2C2_2 184..209 CDD:463886 17/24 (71%)
C2H2 Zn finger 200..220 CDD:275368 15/19 (79%)
C2H2 Zn finger 314..330 CDD:275368 3/15 (20%)
C2H2 Zn finger 395..415 CDD:275368 0/19 (0%)
C2H2 Zn finger 696..716 CDD:275368 7/19 (37%)
zf-H2C2_5 722..746 CDD:404746 13/23 (57%)
C2H2 Zn finger 724..744 CDD:275368 11/19 (58%)
zf-H2C2_2 737..757 CDD:463886 12/19 (63%)
C2H2 Zn finger 752..770 CDD:275368 12/17 (71%)
C2H2 Zn finger 808..828 CDD:275368 9/43 (21%)
C2H2 Zn finger 838..859 CDD:275368 1/20 (5%)
C2H2 Zn finger 1204..1224 CDD:275368 13/19 (68%)
zf-H2C2_2 1216..1241 CDD:463886 15/24 (63%)
C2H2 Zn finger 1232..1253 CDD:275368 13/20 (65%)
zf-C2H2_6 1511..1532 CDD:433576 12/20 (60%)
C2H2 Zn finger 1512..1532 CDD:275368 12/19 (63%)
zf-H2C2_2 1524..1548 CDD:463886 14/23 (61%)
zf-C2H2 1538..1560 CDD:395048 11/21 (52%)
C2H2 Zn finger 1540..1560 CDD:275368 11/19 (58%)

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