DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usf and HMS1

DIOPT Version :9

Sequence 1:NP_572167.3 Gene:Usf / 31384 FlyBaseID:FBgn0029711 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_014675.1 Gene:HMS1 / 854197 SGDID:S000005558 Length:434 Species:Saccharomyces cerevisiae


Alignment Length:409 Identity:82/409 - (20%)
Similarity:153/409 - (37%) Gaps:129/409 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHTADLSEALVHSSFANGQQ 67
            :|.:|.:...:.::|.:.....|.||.          |.    |:.||     .::.|::.|...
Yeast    90 IHLQPPVPPVYKNNTYSATDQYSDSSF----------PN----TSGHT-----PVIDSNYYNDAL 135

  Fly    68 SLILTSDTGNPLMNSQGAQIFLTICGDENSDDSQEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQL 132
            :.|.|:.||:..|.:...          |:.||:||..       ::::.| ...|..:.|    
Yeast   136 ASIPTTTTGSTTMTTDNG----------NTIDSEEYID-------NMEVFS-SEENENIDN---- 178

  Fly   133 PTGCEIYLVKETGSLMGEPPT---KAAIKLELDTLSE-KPLLPSVTTSSSTQSAVITAQTVNPPI 193
                    ||:| .|..|..:   .||..::.:.||. :..||    .|.|:|.::||..:...:
Yeast   179 --------VKQT-DLKSEKDSSLLSAASIVKKEQLSGFENFLP----LSKTESPLVTADEIKSSL 230

  Fly   194 P-GNINTTTSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKKRDDKRRA 257
            . .||:...|.:....|:.:          ..|.|.    :|:...:..:.            |.
Yeast   231 NLENIDNADSMSFKLKTSPI----------RKHFHV----KPKRITRVRTG------------RV 269

  Fly   258 THNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTSGSTSTNGSSHSKGNASSSSGRA 322
            :||.:|::.|..||..|.:|:..:|:|  ..::.:.:..|.||            .:.:...|..
Yeast   270 SHNIIEKKYRSNINDKIEQLRRTVPTL--RVAYKKCNDLPITS------------RDLADLDGLE 320

  Fly   323 PPND-SKSQILIKACEYIKSMQGEIDTLRDCLR-----------ETDSL------------RASN 363
            |... :|:.||.|:.|||..::      |.||:           ..||.            .:|:
Yeast   321 PATKLNKASILTKSIEYICHLE------RKCLQLSLANQHLSNDTRDSFVHLTEPSQPLSDNSSS 379

  Fly   364 QALREELDRLKRQQQLQER 382
            :.::::....:||:|.|.|
Yeast   380 EQVQKQTRSCQRQRQRQPR 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UsfNP_572167.3 HLH 255..343 CDD:278439 23/88 (26%)
HMS1NP_014675.1 bHLHzip_scHMS1_like 265..363 CDD:381405 27/129 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1708
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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