DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usf and CBF1

DIOPT Version :9

Sequence 1:NP_572167.3 Gene:Usf / 31384 FlyBaseID:FBgn0029711 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_012594.1 Gene:CBF1 / 853523 SGDID:S000003821 Length:351 Species:Saccharomyces cerevisiae


Alignment Length:424 Identity:86/424 - (20%)
Similarity:138/424 - (32%) Gaps:176/424 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 TITNHHTADLSEALVHSSFANG----------------QQSLILTSDTGN--PLMNSQGAQI--- 87
            ::.|::.....:..:||:...|                |..|...|:.||  ..:.|:||.:   
Yeast     3 SLANNNKLSTEDEEIHSARKRGYNEEQNYSEARKKQRDQGLLSQESNDGNIDSALLSEGATLKGT 67

  Fly    88 ------FLTICGDENSDDSQE-------------YYTIKQEPGCDLDIHSLLPSNLQLPNNLQLP 133
                  .||...||...|.::             |..:.|......|.|:   ||....|.    
Yeast    68 QSQYESGLTSNKDEKGSDDEDASVAEAAVAATVNYTDLIQGQEDSSDAHT---SNQTNANG---- 125

  Fly   134 TGCEIYLVKETGSLMGE---PPTKAAIK--LELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPI 193
                    :...||.||   .|:...:|  ..|:.::..|:  ..|..|.....:..|:      
Yeast   126 --------EHKDSLNGERAITPSNEGVKPNTSLEGMTSSPM--ESTQQSKNDMLIPLAE------ 174

  Fly   194 PGNINTTTSTTSTTTTTSVLYGSHGNGHGHGHAHAQ---------------ARSQPESAGQTPS- 242
                                       |..|..|.|               ...||...|:.|: 
Yeast   175 ---------------------------HDRGPEHQQDDEDNDDADIDLKKDISMQPGRRGRKPTT 212

  Fly   243 -SKLEAYKKRDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTSGSTSTN 306
             :..:.:||   :|:.:|.|||||||:.||:.|..|.::||...|                    
Yeast   213 LATTDEWKK---QRKDSHKEVERRRRENINTAINVLSDLLPVRES-------------------- 254

  Fly   307 GSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEID-------TLRDCLRETDS--LRAS 362
                                ||:.||..|.|||:.:: |.|       ||:..|.|.::  |.::
Yeast   255 --------------------SKAAILACAAEYIQKLK-ETDEANIEKWTLQKLLSEQNASQLASA 298

  Fly   363 NQALREEL----------DRLKRQQQLQ-ERFHT 385
            |:.|:|||          .|:.|::.:: |..||
Yeast   299 NEKLQEELGNAYKEIEYMKRVLRKEGIEYEDMHT 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UsfNP_572167.3 HLH 255..343 CDD:278439 24/87 (28%)
CBF1NP_012594.1 HLH 220..272 CDD:238036 26/95 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.878984 Normalized mean entropy S4388
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002665
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.760

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