DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usf and sre1

DIOPT Version :9

Sequence 1:NP_572167.3 Gene:Usf / 31384 FlyBaseID:FBgn0029711 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_595694.1 Gene:sre1 / 2540730 PomBaseID:SPBC19C2.09 Length:900 Species:Schizosaccharomyces pombe


Alignment Length:425 Identity:88/425 - (20%)
Similarity:150/425 - (35%) Gaps:139/425 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 TNTSTSPSSVNISNANPTAGPGLMTITNHHTADLSEALVHSSFANGQQSLILTSDTGNPLMNSQG 84
            ||||.||.|.::|:...:....|......:|.:.:..|..|:......||   .::.|||:::  
pombe    77 TNTSLSPHSFSLSDMESSMSNWLNPFAFDNTMNSAPPLFTSTNMGSPNSL---ENSTNPLLSN-- 136

  Fly    85 AQIFLTICGDENSDDSQEYYTIKQEPGCDLD---------IHS---LLPSNLQLPNNLQLPTGCE 137
                   ||..||..: |.:|.......|.|         :||   :.||.:|     ..|:   
pombe   137 -------CGSPNSFQN-ETFTGPSLNEFDADDKIQRQMKILHSVDTIDPSTVQ-----NYPS--- 185

  Fly   138 IYLVKETGSLMGEPPTKAAIKLE-----LDTLSE-KPLLPSVTTSSSTQSAVITAQTVNPPIPGN 196
                    :.|..|..|  :|.|     :||..: :|....:..|.|::.:....:|    :|.:
pombe   186 --------ADMSNPEVK--LKTEEIITPMDTTCKPEPSAKKIKLSPSSEDSCSIPET----LPFS 236

  Fly   197 INTTTSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKKRDDKRRATHNE 261
            ...:..:.|.:.|...:.|..|.                                  .::..||.
pombe   237 APKSRGSLSPSETPDFVAGPGGK----------------------------------PKKTAHNM 267

  Fly   262 VERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTSGSTSTNGSSHSKGNA---SSSSGRAP 323
            :|:|.|..:|..|.:|::.:|||.::::.                    ..||:   ....|..|
pombe   268 IEKRYRTNLNDRICELRDAVPSLRAAAAL--------------------RCGNSLDDEDLGGLTP 312

  Fly   324 PND-SKSQILIKACEYIKSMQGEIDTLRDCLRETDSLRASNQALREELDRLKRQQQLQER--FH- 384
            ... :|..||.||.|||:                 .|.|.|:.|:      |..:||.:|  |: 
pombe   313 ARKLNKGTILAKATEYIR-----------------HLEAKNKELQ------KTNKQLSDRLAFYE 354

  Fly   385 --TAGGRSTFNVTLNSLNSSATSDLFEGIDTTPNL 417
              :....|.....:||:|..::||......:.|||
pombe   355 DPSMAPPSNDTRAVNSVNVVSSSDYSVHQSSRPNL 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UsfNP_572167.3 HLH 255..343 CDD:278439 23/91 (25%)
sre1NP_595694.1 HLH 261..333 CDD:278439 23/108 (21%)
DUF2014 517..766 CDD:286510
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1708
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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