DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usf and Srebf1

DIOPT Version :10

Sequence 1:NP_572167.3 Gene:Usf / 31384 FlyBaseID:FBgn0029711 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_035610.1 Gene:Srebf1 / 20787 MGIID:107606 Length:1134 Species:Mus musculus


Alignment Length:351 Identity:75/351 - (21%)
Similarity:119/351 - (33%) Gaps:112/351 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 HSLLPSNLQ--LPNNLQLPTGCEIYLVKETGSLMGEPPTKAAIKLELDTLSEKPLLPSVTTSSST 179
            :|.|||...  ||.|.|.|.. .:.|....|.|    || .|:..::.:|:.:..||:   |::.
Mouse   162 YSSLPSGFSGTLPGNTQQPPS-SLPLAPAPGVL----PT-PALHTQVQSLASQQPLPA---SAAP 217

  Fly   180 QSAVITAQTVNPPIP-------------GNINTTTSTTSTTTTTSVLYGSHGNGHGHGHAHAQAR 231
            ::..:|:|....|:.             ..:.|....|..|...|.|        ..|.|.....
Mouse   218 RTNTVTSQVQQVPVVLQPHFIKADSLLLTAVKTDAGATVKTAGISTL--------APGTAVQAGP 274

  Fly   232 SQPESAGQT--------------PSSKLEAYKK-------RDDKRRATHNEVERRRRDKINSWIF 275
            .|...:|.|              |..:|.|..|       |.:||.| ||.:|:|.|..||..|.
Mouse   275 LQTLVSGGTILATVPLVVDTDKLPIHRLAAGSKALGSAQSRGEKRTA-HNAIEKRYRSSINDKIV 338

  Fly   276 KLKEMLPSLSSSSSFSEASTSPSTSGSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIK 340
            :||:::..       :||..                               :||.:|.||.:||:
Mouse   339 ELKDLVVG-------TEAKL-------------------------------NKSAVLRKAIDYIR 365

  Fly   341 SMQGEIDTLRDCLRETDSLRASNQALREE---LDRLKRQQQLQERFHTAGGRSTFNVTLNSLNSS 402
            .:|                 .|||.|::|   |....:.:.|::.....|.....:|::..:...
Mouse   366 FLQ-----------------HSNQKLKQENLTLRSAHKSKSLKDLVSACGSGGGTDVSMEGMKPE 413

  Fly   403 ATSDLFEGIDTTPNLAAVSSLGFGKR 428
            ....|........:.:..|.|.||.|
Mouse   414 VVETLTPPPSDAGSPSQSSPLSFGSR 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UsfNP_572167.3 bHLH_SF 258..347 CDD:469605 20/88 (23%)
Srebf1NP_035610.1 Transcriptional activation (acidic). /evidence=ECO:0000250|UniProtKB:P36956 1..60
9aaTAD. /evidence=ECO:0000250|UniProtKB:P36956 27..35
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 46..73
Atrophin-1 109..>217 CDD:460830 19/63 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..149
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 170..195 8/29 (28%)
Interaction with LMNA. /evidence=ECO:0000269|PubMed:11929849 227..487 54/277 (19%)
bHLHzip_SREBP1 313..384 CDD:381491 30/126 (24%)
Leucine-zipper 367..388 7/37 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 415..468 6/25 (24%)
COG3899 <562..1052 CDD:443106
Blue background indicates that the domain is not in the aligned region.

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