DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usf and srebf2

DIOPT Version :10

Sequence 1:NP_572167.3 Gene:Usf / 31384 FlyBaseID:FBgn0029711 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_001082935.2 Gene:srebf2 / 100037309 ZFINID:ZDB-GENE-070410-8 Length:1095 Species:Danio rerio


Alignment Length:417 Identity:85/417 - (20%)
Similarity:135/417 - (32%) Gaps:146/417 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHTADLSEA---------------------- 56
            |.:|:.|.....||::    ..|...| :.|.:..||..|::|                      
Zfish    49 GGATARTLPQAVPSAI----LTPPHTP-VQTSSQTHTQTLTQAHTQTHTQTRTPPVLQPRPQPIT 108

  Fly    57 -----------LVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDSQEYYTIKQEP 110
                       |...:.|..|..:|..:.|.:..:.:|      .||...|:...|..     :|
Zfish   109 QVQTQTFPMQTLAVQTQAQPQTVMITPTATPSRFIQNQ------VICQQNNATSFQVL-----QP 162

  Fly   111 GCDLDIHSLLPSNLQLPNNLQ-----LPTGCEIYLVKETGSLMGEPPTKAAIKLELDTLSEKPLL 170
                .:.|::.|....|..:|     .|.|..|.      :|...|.|...:..::..|..:|.:
Zfish   163 ----QMQSIMTSPQVQPMTIQHQRVLTPAGQTIQ------TLSTAPTTVHTMSQQVPVLVHQPQI 217

  Fly   171 PS-----VTTSSSTQSAVITAQTVNPPIPGNINTTTSTTSTT-------------TTTSVLYG-- 215
            ..     :||.......:.|.|:     |..|.|.|:...||             ||..|:.|  
Zfish   218 LKTDSLLLTTKPDGTQVLSTVQS-----PTGITTLTTPIQTTALQMPTLMSSNILTTVPVVMGGG 277

  Fly   216 --------SHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKKRDDKRRATHNEVERRRRDKINS 272
                    |.|..|..|.|.......|...   |...:     ::.:||.|||.:|:|.|..||.
Zfish   278 DKLPIKQLSSGPAHNIGGARVGVEQSPVVG---PGGVV-----KEGERRTTHNIIEKRYRSSIND 334

  Fly   273 WIFKLKEMLPSLSSSSSFSEASTSPSTSGSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACE 337
            .|.:|::::                              .||.:..        .||.:|.||.:
Zfish   335 KILELRDLV------------------------------LGNDAKM--------HKSGVLRKAID 361

  Fly   338 YIKSMQGEIDTLRDCLRETDSLRASNQ 364
            |||.:|.....||   :|..:|:.:||
Zfish   362 YIKYLQQVNHKLR---QENLTLKMANQ 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UsfNP_572167.3 bHLH_SF 258..347 CDD:469605 21/88 (24%)
srebf2NP_001082935.2 Transcriptional activation (acidic). /evidence=ECO:0000250|UniProtKB:P36956, ECO:0000250|UniProtKB:Q12772 1..47
Leucine-zipper 366..387 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.

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