DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHOp24 and AT1G09580

DIOPT Version :10

Sequence 1:NP_572165.1 Gene:CHOp24 / 31382 FlyBaseID:FBgn0029709 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_172429.1 Gene:AT1G09580 / 837485 AraportID:AT1G09580 Length:217 Species:Arabidopsis thaliana


Alignment Length:213 Identity:51/213 - (23%)
Similarity:95/213 - (44%) Gaps:7/213 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGG---FLDVD 62
            |........||:..:.::.....|..:.|.....:|..|.::........:.:|...   ...:.
plant     7 MRREFPTAFLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTIS 71

  Fly    63 IKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSID--VGDAPQRAPG 125
            :|::.|..:.:|..|..:.|::.|.....|.|..||..:..|...|.|..:||  .|.|.:....
plant    72 VKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWAS 136

  Fly   126 APGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLM 190
            ...:|::...:||  ||:|.|.:.::.....|:..|:...|:::|.|||||..:|.....|.:.:
plant   137 IAKKEKIEGVELE--IRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMSLGVCIAV 199

  Fly   191 TVGQVYYLKRFFEVKRVV 208
            :..||.|||::||.|:::
plant   200 SGFQVLYLKQYFEKKKLI 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHOp24NP_572165.1 EMP24_GP25L 24..203 CDD:426051 45/183 (25%)
AT1G09580NP_172429.1 EMP24_GP25L 30..212 CDD:426051 45/183 (25%)

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