DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHOp24 and AT3G10780

DIOPT Version :10

Sequence 1:NP_572165.1 Gene:CHOp24 / 31382 FlyBaseID:FBgn0029709 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_187689.2 Gene:AT3G10780 / 820247 AraportID:AT3G10780 Length:217 Species:Arabidopsis thaliana


Alignment Length:194 Identity:42/194 - (21%)
Similarity:90/194 - (46%) Gaps:11/194 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 AFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLD----VDIKISGPDNHVMHESEKESSGKY 84
            |..::|....|.|.:|.::......:.:..||..|..    :|::::.|....:::....:.|:.
plant    26 AIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTLDVRVTSPYGKELYKIANVTHGQA 90

  Fly    85 TFVAPAKGTYTVCF---NNERSSMTPKLVMFSID--VGDAPQRAPGAPGEEEVGHTKLEDMIREL 144
            .|.....||:..|.   :::........|:.|:|  :|...:.......:|::...:||  ||..
plant    91 AFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDWDSVAKKEKIEGVELE--IRRS 153

  Fly   145 SGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEVKRVV 208
            :...::::....|:.:|:...|.:||.||:||.........|.:::::.||.||||:|..|:::
plant   154 TEYASAIRANILYLRIREAYMREINEKTNTRVNQLGLMSLGVAIVVSISQVLYLKRYFLKKKLI 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHOp24NP_572165.1 EMP24_GP25L 24..203 CDD:426051 40/187 (21%)
AT3G10780NP_187689.2 EMP24_GP25L 26..211 CDD:426051 40/186 (22%)

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