DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CHOp24 and tmed1b

DIOPT Version :9

Sequence 1:	NP_001284862.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_001074109.1	Gene:	tmed1b / 791158	ZFINID:	ZDB-GENE-070112-1112	Length:	226	Species:	Danio rerio

Alignment Length:	218	Identity:	63/218 - (28%)
Similarity:	102/218 - (46%)	Gaps:	15/218 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 STLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISG 67
            |.|..|.||.|::.........|...:.|.::|||:::........:.::||.|..:|||..:..
Zfish    10 SLLGYVTLLFGAVNAFSPADTEFTFLLPAASKECFYQSAVHNGSVEIEYQVIAGAGMDVDFSVVS 74

  Fly    68 PDN-HVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGE-- 129
            |.. |::.|. :.|.|.:......:|.|.:||:|..|.::.|:|.|.: :.|.|....||..|
Zfish    75 PQGIHLISEF-RRSDGVHMVEPTEEGDYQICFDNTFSRLSEKMVFFEV-ILDHPSNDAGADDEWA 137

  Fly   130 -----EEVGHTKLEDMIRELSGT----LTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEAL 185
                 |.:...||:| |:|...|    |...:..|.::...:...|::.|:...||..||....|
Zfish   138 GLGEPESILEYKLDD-IKESMETVHRRLERSRQMQTFLRAFEARDRNLLEDNLWRVSFWSCVNLL 201

  Fly   186 VLVLMTVGQVYYLKRFFEVKRVV 208
            ||:.:...|||.|:|.|:.||.|
Zfish   202 VLLSVAFIQVYTLRRLFDDKRRV 224

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CHOp24	NP_001284862.1	EMP24_GP25L	24..203	CDD:279450	53/190 (28%)
tmed1b	NP_001074109.1	EMP24_GP25L	31..218	CDD:279450	53/189 (28%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000272
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910