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Protein Alignment CHOp24 and Tmed3

DIOPT Version :9

Sequence 1:	NP_001284862.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_079636.2	Gene:	Tmed3 / 66111	MGIID:	1913361	Length:	221	Species:	Mus musculus

Alignment Length:	204	Identity:	69/204 - (33%)
Similarity:	101/204 - (49%)	Gaps:	5/204 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 LLLVGSLLILCRT----SHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISGPD 69
            :||...||:|.|.    |......:..:.::||.|.||.|.||.:.::||.||..|||..:..|.
Mouse    13 MLLQLLLLLLLRAEPLRSAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPR 77

  Fly    70 NHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGH 134
            .:|::...|:....:|:...|||.|..||:||.|:.:.|.|.|...|||.|...|.. |......
Mouse    78 GNVIYRETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDM-GNRVTAL 141

  Fly   135 TKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLK 199
            |::|.....:...|.:|...|.:..:|:...|:..|:.||||..||..|.:.|.:::..||..||
Mouse   142 TQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLK 206

  Fly   200 RFFEVKRVV 208
            .||..||.|
Mouse   207 SFFTEKRPV 215

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.