DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHOp24 and tmed7

DIOPT Version :10

Sequence 1:NP_572165.1 Gene:CHOp24 / 31382 FlyBaseID:FBgn0029709 Length:208 Species:Drosophila melanogaster
Sequence 2:NP_989261.1 Gene:tmed7 / 394874 XenbaseID:XB-GENE-5847420 Length:219 Species:Xenopus tropicalis


Alignment Length:205 Identity:74/205 - (36%)
Similarity:110/205 - (53%) Gaps:9/205 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 STLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISG 67
            |.|:.||..:|     |..:......:..:.::||:|::..|||..:.|:||.||..|||.::..
 Frog    15 SFLSFVLFSLG-----CVRASELTFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLED 74

  Fly    68 PDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEE- 131
            ||..|:::..|:....:||.|...|||..||:||.|:.|.|.|.|...|||.|   |..|.|.. 
 Frog    75 PDGIVLYKEMKKQYDSFTFTATRNGTYKFCFSNEFSTFTHKTVYFDFQVGDDP---PLFPNENRA 136

  Fly   132 VGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVY 196
            ...|::|.....:...|.||...|.:..:|:...||..|:.||||..||..||::|:::::|||:
 Frog   137 TALTQMESSCVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNSRVAYWSIGEAIILLVVSIGQVF 201

  Fly   197 YLKRFFEVKR 206
            .||.||..||
 Frog   202 LLKSFFSDKR 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHOp24NP_572165.1 EMP24_GP25L 24..203 CDD:426051 65/179 (36%)
tmed7NP_989261.1 EMP24_GP25L 31..208 CDD:426051 65/179 (36%)

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