back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CHOp24 and Tmed9

DIOPT Version :10

Sequence 1:	NP_572165.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_001009703.1	Gene:	Tmed9 / 361207	RGDID:	1307627	Length:	235	Species:	Rattus norvegicus

Alignment Length:	233	Identity:	55/233 - (23%)
Similarity:	105/233 - (45%)	Gaps:	47/233 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 LLVGS-----LLILCRTSH--AFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGF--------- 58
            ||:|.     ||:||..:.  |....:....::||.|.:...|       ::.|.:
  Rat    16 LLLGRGMRAFLLLLCLAARGGALYFHIGETEKKCFIEEIPDET-------MVIGNYRTQLYDKQR 73

  Fly    59 ---------LDVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFS- 113
                     |.:.:::..|::.|:...:..|.|::||.:...|.:.:|.:    |.:.|..:|:
  Rat    74 EEYQPATPGLGMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLH----SNSTKFSLFAG 134

  Fly   114 --------IDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNE 170
                    |.||:..........::::...:|.  :|:|...:..::.||.|...|::..|..:|
  Rat   135 GMLRVHLDIQVGEHANDYAEIAAKDKLSELQLR--VRQLVEQVEQIQKEQNYQRWREERFRQTSE 197

  Fly   171 NTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEVKRVV 208
            :||.||:.||..:.|:||.:.|.|:.:||.|||.|::|
  Rat   198 STNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.