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Protein Alignment CHOp24 and Tmed3

DIOPT Version :9

Sequence 1:	NP_001284862.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_001004249.1	Gene:	Tmed3 / 300888	RGDID:	1303327	Length:	221	Species:	Rattus norvegicus

Alignment Length:	210	Identity:	66/210 - (31%)
Similarity:	103/210 - (49%)	Gaps:	7/210 - (3%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 STLAKVLLLVGSLLILCRTSH----AFIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDI 63
            |:...::||:  ||:|.|...    .....:..:.::||.|.||.|.||.:.::||.||..|||.
  Rat     9 SSFQMLMLLL--LLLLLRAERLRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDC 71

  Fly    64 KISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPG 128
            .:..|..::::...|:....:|:....||.|..||:||.|:.:.|.|.|...|||.|...|.. |
  Rat    72 YVEDPMGNIIYRETKKQYDSFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDM-G 135

  Fly   129 EEEVGHTKLEDMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVG 193
            ......|::|.....:...|.:|...|.:..:|:...|:..|:.||||..||..|.:.|.:::..
  Rat   136 NRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFS 200

  Fly   194 QVYYLKRFFEVKRVV 208
            ||..||.||..||.:
  Rat   201 QVLLLKSFFTEKRPI 215

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.