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Protein Alignment CHOp24 and TMED1

DIOPT Version :10

Sequence 1:	NP_572165.1	Gene:	CHOp24 / 31382	FlyBaseID:	FBgn0029709	Length:	208	Species:	Drosophila melanogaster
Sequence 2:	NP_006849.1	Gene:	TMED1 / 11018	HGNCID:	17291	Length:	227	Species:	Homo sapiens

Alignment Length:	196	Identity:	55/196 - (28%)
Similarity:	91/196 - (46%)	Gaps:	16/196 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 FIVSVDAHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAP 89
            |...:.|..::||:::..........::||.|..||||..:..|...::....:::.|.:|....
Human    34 FTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPT 98

  Fly    90 AKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPG------EEEVGHTKLEDMIRELSGTL 148
            ..|.|.:||:|..|:::.|||.|.: :.|:.|......|      .||:...|:||:...:....
Human    99 EAGDYKLCFDNSFSTISEKLVFFEL-IFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162

  Fly   149 TSVKHEQEYM------HVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKRFFEVKRV 207
            |.::...:.:      ..||   |::.|....||..||.....||:|:.|.||..|||||:.||.
Human   163 TRLERSIQMLTLLRAFEARD---RNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRP 224

  Fly   208 V 208
            |
Human   225 V 225

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.