DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rb and betaCOP

DIOPT Version :9

Sequence 1:NP_001162664.2 Gene:rb / 31381 FlyBaseID:FBgn0003210 Length:1160 Species:Drosophila melanogaster
Sequence 2:NP_523400.1 Gene:betaCOP / 32820 FlyBaseID:FBgn0008635 Length:964 Species:Drosophila melanogaster


Alignment Length:875 Identity:164/875 - (18%)
Similarity:306/875 - (34%) Gaps:253/875 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LKQMLDSNKDGLKLEAMKRIIGMIARGRDASDLFPAVVKNVVS-KNIEVKKLVYVYLVRYAEEQQ 111
            ||:.|:.....:|:|.:||:|.::..|.....|...:::.|:. :|..:|||:.::.....:...
  Fly    24 LKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSA 88

  Fly   112 DLALLS-----ISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTA 171
            |..||.     ...:::.|:.||:.:|.|.||.|..::...::..:|.|||........|||:.|
  Fly    89 DGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNA 153

  Fly   172 AHAIPKLYSLDADQKDELVMVIEKLLSDRTTLVVGSAVMAFDEVCPER--VDLIHKNYRKLCNFL 234
            ..||..:|.           ..:.|:.|...|:........|..|...  :.|:|.:..:..|:|
  Fly   154 VLAIFTIYK-----------NFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQERALNYL 207

  Fly   235 L----DVDEWG---QVIIINMLTRYA------RTQFVDPNADDEDLVNDGLGETPVSERFYDESS 286
            .    .|..:|   |::|:.::.:..      |::|:                            
  Fly   208 ASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFI---------------------------- 244

  Fly   287 HSSSHSDDGSSDDEKNKSSTNNKNNGGGNGSRTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASV 351
                             ....|..|...|..|..|:.:          |:.....|       :.
  Fly   245 -----------------RCIYNLLNSSSNAVRYESAGT----------LITLSLAP-------TA 275

  Fly   352 VMAVAQLYHHVAPK---NEVQLIAKALIRLLRSHKEVQSV-------VLNCIAS--MSTKRKAIF 404
            :.|.|..|..:..|   |.|:||....:..::.|:.::.|       ||..:|:  :..:||.: 
  Fly   276 IKAAASCYIELVVKESDNNVKLIVLDRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTL- 339

  Fly   405 EPHLKSFFVRTSDPTHIKLLKLDILTNLASAGSISLILRE--FQTY-ISSSD----RSFVAATIQ 462
                              .|.||::.: .:.|.:.|:|::  .:|: :...|    |..:..|:.
  Fly   340 ------------------ALALDLVYS-RNIGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLH 385

  Fly   463 AIGRCASSIKEVTETCLSGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHFEIITQMAKLIDYIN 527
            .   |:....:|....:..||..||:.:|...|:.::.|:..:|...|....||..:.:....|.
  Fly   386 T---CSIKFPDVAANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIK 447

  Fly   528 VPAARAAIIWLIGEYNE----------------KVPLIAPDVLRKMAKSFVDEQDVVKLQVLNLG 576
            ......|.:|::|||.|                :||::..: .|::|....:||   |.|..:.|
  Fly   448 SSKIHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAE-QRRLAGDQTEEQ---KQQQGSAG 508

  Fly   577 VKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASGTSS--VLSQHARQVFLASK 639
            .....:..|.:                                .||.:|  |.|........|..
  Fly   509 GNAAGSAAEGS--------------------------------GSGNASNKVTSDGTYATQSAYS 541

  Fly   640 PAPVPESKYR--------DGNNFQLGSLSHYLNMPAAGYKELP---------AFPVIPPDSSVRN 687
            .|||.:::.|        ||:.|...:||..|...|..|.||.         ...|:...||:.:
  Fly   542 LAPVAKAEKRPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILH 606

  Fly   688 I--AGFMQDKLPGEDSPSGHSKDKSGREGGKEKGAGGEKGF-----LSE-SDDKSSAYSESGSSS 744
            :  :||....:..:|:                     ::.|     ||| :.:..|.::.....:
  Fly   607 LGKSGFPSKPITNDDT---------------------DRIFVCLRTLSERTPEAISVFTLYCREA 650

  Fly   745 GSGTSDSESDSDGSGSSDEEEEEVQKQQPT-----------KVSSVKERLIDAGSNELAATS--- 795
            .....|::.|.| .....|:::...|.||.           :.:.:.|.:.::..|:..|.|   
  Fly   651 LGKMLDAQHDED-QRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVFESSLNQALAGSKNA 714

  Fly   796 --SPVKATINNNNNARGSSGTSDSEDSSAY 823
              |.|.:..:..|.....:|.||...:.||
  Fly   715 QLSDVASPNSKLNKVTQLTGFSDPVYAEAY 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rbNP_001162664.2 Adaptin_N 40..621 CDD:279882 114/628 (18%)
HEAT repeat 48..73 CDD:293787 8/24 (33%)
HEAT repeat 117..144 CDD:293787 8/31 (26%)
Cnd1 129..>252 CDD:289487 30/131 (23%)
HEAT repeat 147..179 CDD:293787 10/31 (32%)
HEAT repeat 188..214 CDD:293787 3/25 (12%)
AP3B1_C 881..1019 CDD:291462
betaCOPNP_523400.1 Adaptin_N 17..562 CDD:279882 125/669 (19%)
Coatamer_beta_C 678..820 CDD:285019 13/67 (19%)
Coatomer_b_Cpla 826..953 CDD:291472
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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