Sequence 1: | NP_001162664.2 | Gene: | rb / 31381 | FlyBaseID: | FBgn0003210 | Length: | 1160 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001101179.1 | Gene: | Ap4b1 / 310746 | RGDID: | 1310529 | Length: | 739 | Species: | Rattus norvegicus |
Alignment Length: | 703 | Identity: | 172/703 - (24%) |
---|---|---|---|
Similarity: | 290/703 - (41%) | Gaps: | 163/703 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 64 MKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDP 128
Fly 129 NQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAAHAIPKLYSLDADQKDE--LVM 191
Fly 192 VIEKLLSDRTTLVVGSAVMAFDEVCPERVDLIHKN--YRKLCNFLLDVDEWGQVIIINMLTRYAR 254
Fly 255 TQFVDPNADDE--DLVNDGLGETPVSERFYDESSHSSSHSDDGSSDDEKNKSSTNNKNNGGGNGS 317
Fly 318 RTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMAVAQLYHHVAPK-NEVQLIAKALIR---- 377
Fly 378 -LLRSHKEVQSVVLNCIASMSTKRKAI------FEPHLKSFFVRTSDPTHIKLLKLDILTNLASA 435
Fly 436 GSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETCLSGLVHLLSNHDEHVVAESVVV 500
Fly 501 IK--RLLQTKAAEHFEIITQ-MAKLIDYINVPAARAAIIWLIGEYNEKVPLIAPDVLRKMAKSFV 562
Fly 563 DEQ-DVVKLQVLNLGVKLYLTNPEQTSLLCQYVF-TLARY----DPNYDVRDRARFLRQIIFPAS 621
Fly 622 GTSSVLSQHARQVFLASKPAPVPESKYRDGNNFQLGSLSHYLNMP----AAGYKEL-PAF----- 676
Fly 677 -------PVIPPDSSVRNIAGFMQDKLPGEDSPSGHSKDKSGREGGKEKGAGG 722 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rb | NP_001162664.2 | Adaptin_N | 40..621 | CDD:279882 | 151/583 (26%) |
HEAT repeat | 48..73 | CDD:293787 | 2/8 (25%) | ||
HEAT repeat | 117..144 | CDD:293787 | 10/26 (38%) | ||
Cnd1 | 129..>252 | CDD:289487 | 31/126 (25%) | ||
HEAT repeat | 147..179 | CDD:293787 | 6/31 (19%) | ||
HEAT repeat | 188..214 | CDD:293787 | 7/27 (26%) | ||
AP3B1_C | 881..1019 | CDD:291462 | |||
Ap4b1 | NP_001101179.1 | Adaptin_N | 9..525 | CDD:279882 | 151/589 (26%) |
HEAT repeat | 86..113 | CDD:293787 | 10/26 (38%) | ||
Cnd1 | 98..235 | CDD:289487 | 35/142 (25%) | ||
HEAT repeat | 120..150 | CDD:293787 | 6/29 (21%) | ||
HEAT repeat | 159..185 | CDD:293787 | 7/25 (28%) | ||
HEAT repeat | 198..222 | CDD:293787 | 7/23 (30%) | ||
B2-adapt-app_C | 620..732 | CDD:198088 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166337032 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323029at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.850 |