DRSC/TRiP Functional Genomics Resources

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Protein Alignment rb and Ap4b1

DIOPT Version :9

Sequence 1:NP_001162664.2 Gene:rb / 31381 FlyBaseID:FBgn0003210 Length:1160 Species:Drosophila melanogaster
Sequence 2:NP_001101179.1 Gene:Ap4b1 / 310746 RGDID:1310529 Length:739 Species:Rattus norvegicus


Alignment Length:703 Identity:172/703 - (24%)
Similarity:290/703 - (41%) Gaps:163/703 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 MKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRALKDP 128
            ::|:|..:.:|.|.||:|..:||...:.:|..|||||:|:..||..:.|||||:|:|..:...||
  Rat    33 IQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDP 97

  Fly   129 NQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAAHAIPKLYSLDADQKDE--LVM 191
            |.::|..|||.:.|:|:..:...:...:.:...|.:.|||:.|.....|:::|..|.:.:  ||.
  Rat    98 NPMVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVN 162

  Fly   192 VIEKLLSDRTTLVVGSAVMAFDEVCPERVDLIHKN--YRKLCNFLLDVDEWGQVIIINMLTRYAR 254
            .:..||.|:..:||.:.:.:.:|:..:...::...  ...|.|.:..:|:|||..::|.|.||  
  Rat   163 ELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRY-- 225

  Fly   255 TQFVDPNADDE--DLVNDGLGETPVSERFYDESSHSSSHSDDGSSDDEKNKSSTNNKNNGGGNGS 317
                .|.:::|  |::|                                                
  Rat   226 ----QPRSEEELFDILN------------------------------------------------ 238

  Fly   318 RTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMAVAQLYHHVAPK-NEVQLIAKALIR---- 377
                 ..:||                |:|.:..|||...:|:..:|.| ..||  ...|:|    
  Rat   239 -----LLDSY----------------LKSSSTGVVMGATKLFLILAKKFPHVQ--TDVLVRVKGP 280

  Fly   378 -LLRSHKEVQSVVLNCIASMSTKRKAI------FEPHLKSFFVRTSDPTHIKLLKLDILTNLASA 435
             |.....|.:.:   |.|::...|:.:      |..|.|.||...|:|.:|||.|:::|..|.:.
  Rat   281 LLAACSSESREL---CFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVND 342

  Fly   436 GSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETCLSGLVHLLSNHDEHVVAESVVV 500
            .::..:|.|.:.|.:.....|..|.|.|||..|   |..|:.|:..|..||....||:   :.||
  Rat   343 ENVQQVLEELRGYCTDVSADFAQAAIFAIGNIA---KTYTDQCVQILTELLGLRQEHI---TTVV 401

  Fly   501 IK--RLLQTKAAEHFEIITQ-MAKLIDYINVPAARAAIIWLIGEYNEKVPLIAPDVLRKMAKSFV 562
            ::  |.|.....:..|.:.| :....:.|.....:.|:|||:|.:.||:| .||.||....:|..
  Rat   402 VQTFRDLVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGEKIP-NAPYVLEDFVESVK 465

  Fly   563 DEQ-DVVKLQVLNLGVKLYLTNPEQTSLLCQYVF-TLARY----DPNYDVRDRARFLRQIIFPAS 621
            .|. ..||:::|...::|:|:.|.:    ||.|. .|..|    :.:..||||..|..:::.   
  Rat   466 SETFPAVKMELLTALMRLFLSRPAE----CQDVLGRLLLYCIEEEKDMAVRDRGLFYYRLLL--- 523

  Fly   622 GTSSVLSQHARQVFLASKPAPVPESKYRDGNNFQLGSLSHYLNMP----AAGYKEL-PAF----- 676
                |.....:|:..:.|..|            .||.|......|    |:.:..| |.:     
  Rat   524 ----VGIDKTKQILCSPKSDP------------SLGLLEDQPERPVNSWASDFNTLAPVYGKAHW 572

  Fly   677 -------PVIPPDSSVRNIAGFMQDKLPGEDSPSGHSKDKSGREGGKEKGAGG 722
                   .:.|....:.:.|.|         :.|||...:..:||.:|....|
  Rat   573 ATISKCQKIEPHRLELPHNASF---------ATSGHLIAEENKEGAQEPPDSG 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rbNP_001162664.2 Adaptin_N 40..621 CDD:279882 151/583 (26%)
HEAT repeat 48..73 CDD:293787 2/8 (25%)
HEAT repeat 117..144 CDD:293787 10/26 (38%)
Cnd1 129..>252 CDD:289487 31/126 (25%)
HEAT repeat 147..179 CDD:293787 6/31 (19%)
HEAT repeat 188..214 CDD:293787 7/27 (26%)
AP3B1_C 881..1019 CDD:291462
Ap4b1NP_001101179.1 Adaptin_N 9..525 CDD:279882 151/589 (26%)
HEAT repeat 86..113 CDD:293787 10/26 (38%)
Cnd1 98..235 CDD:289487 35/142 (25%)
HEAT repeat 120..150 CDD:293787 6/29 (21%)
HEAT repeat 159..185 CDD:293787 7/25 (28%)
HEAT repeat 198..222 CDD:293787 7/23 (30%)
B2-adapt-app_C 620..732 CDD:198088
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337032
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323029at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.850

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