Sequence 1: | NP_001162664.2 | Gene: | rb / 31381 | FlyBaseID: | FBgn0003210 | Length: | 1160 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001022937.1 | Gene: | apb-1 / 175376 | WormBaseID: | WBGene00000160 | Length: | 955 | Species: | Caenorhabditis elegans |
Alignment Length: | 1190 | Identity: | 297/1190 - (24%) |
---|---|---|---|
Similarity: | 480/1190 - (40%) | Gaps: | 335/1190 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 47 DLKQMLDSNKDGLKLEAMKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYAEEQQ 111
Fly 112 DLALLSISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAAHAIP 176
Fly 177 KLYSLD-ADQKDE-LVMVIEKLLSDRTTLVVGSAVMAFDEVCPER--VDLIHKNYRKLCNFLLDV 237
Fly 238 DEWGQVIIINMLTRYARTQFVDPNADDEDLVNDGLGETPVSERFYDESSHSSSHSDDGSSDDEKN 302
Fly 303 KSSTNNKNNGGGNGSRTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMA------------- 354
Fly 355 -----VAQLYHHVAPKNEVQLIAKALIRLLRSHKEVQSVVLNCIASMSTKRKAIFEPHLKSFFVR 414
Fly 415 TSDPTHIKLLKLDILTNLASAGSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETCL 479
Fly 480 SGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHFEIITQMAKLIDYINVPAARAAIIWLIGEYNE 544
Fly 545 KVPLIAPDVLRKMAKSFVDEQDVVKLQVLNLGVKLYLTNPEQTSLLCQYVFTLARYD-PNYDVRD 608
Fly 609 RARFLRQIIF--PASGTSSVLSQHARQVFLASKPAPVPESKYRDGNNFQLGSLSHYLNMPAAGYK 671
Fly 672 ELPAFPVIPPDSSVRNIAGFMQDKLPGEDSPSGHSKDKSGREGGKEKGAGGEKGFLSESDDKSSA 736
Fly 737 YSESGSSSGSGTSDSESDSDGSGSSDEEEEEVQKQQPTKVSSVKERLIDAGSNELAATSSPVKAT 801
Fly 802 INNNNNARGSSGTSDSEDSSAYSGSSSDDSASGSDNEVKKNETKTDTGTKPEKLKEKHEKQPEQT 866
Fly 867 AVKSNLDLLLDLDDIP-PIGPVMTPS------LGGFLTPGTPMMAGQAAPL-----QPQHARNRV 919
Fly 920 ELV------GPSHIEFKHKELLNKVSGHGLHLAYRFTRSPHLYSSSMCSIELQFQNRGEKEITAI 978
Fly 979 RLGQTTLPAGM----QLNEFAPITVLQPQQTASGVLGVDFNDSTHAVDLELLSSAGSSRLQLKPP 1039
Fly 1040 VGELVRSVQI---------GESCHR---EERAKLRGMNEHQCELRG------------LRQDLID 1080
Fly 1081 VVALRQ-----------KVFESINVAHTHSSSSGQLHCFAGQTLSSKSLVLLTLDWKTEDALTLL 1134
Fly 1135 VNCEKMVIGSMVLNELRNAL 1154 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rb | NP_001162664.2 | Adaptin_N | 40..621 | CDD:279882 | 188/598 (31%) |
HEAT repeat | 48..73 | CDD:293787 | 10/24 (42%) | ||
HEAT repeat | 117..144 | CDD:293787 | 11/26 (42%) | ||
Cnd1 | 129..>252 | CDD:289487 | 46/126 (37%) | ||
HEAT repeat | 147..179 | CDD:293787 | 12/31 (39%) | ||
HEAT repeat | 188..214 | CDD:293787 | 10/26 (38%) | ||
AP3B1_C | 881..1019 | CDD:291462 | 35/159 (22%) | ||
apb-1 | NP_001022937.1 | Adaptin_N | 11..531 | CDD:279882 | 187/596 (31%) |
HEAT repeat | 51..75 | CDD:293787 | 13/23 (57%) | ||
HEAT repeat | 87..114 | CDD:293787 | 11/26 (42%) | ||
Cnd1 | 99..265 | CDD:289487 | 59/238 (25%) | ||
HEAT repeat | 121..151 | CDD:293787 | 12/29 (41%) | ||
HEAT repeat | 160..186 | CDD:293787 | 10/25 (40%) | ||
HEAT repeat | 197..224 | CDD:293787 | 9/26 (35%) | ||
HEAT repeat | 389..413 | CDD:293787 | 9/23 (39%) | ||
HEAT repeat | 425..454 | CDD:293787 | 13/28 (46%) | ||
HEAT repeat | 461..491 | CDD:293787 | 11/29 (38%) | ||
HEAT repeat | 502..538 | CDD:293787 | 12/44 (27%) | ||
Alpha_adaptinC2 | 736..834 | CDD:197886 | 21/111 (19%) | ||
B2-adapt-app_C | 844..955 | CDD:198088 | 31/135 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323029at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |