DRSC/TRiP Functional Genomics Resources

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Protein Alignment rb and ap4b1

DIOPT Version :9

Sequence 1:NP_001162664.2 Gene:rb / 31381 FlyBaseID:FBgn0003210 Length:1160 Species:Drosophila melanogaster
Sequence 2:XP_002932178.2 Gene:ap4b1 / 100495149 XenbaseID:XB-GENE-949306 Length:724 Species:Xenopus tropicalis


Alignment Length:670 Identity:162/670 - (24%)
Similarity:287/670 - (42%) Gaps:139/670 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 DLKQMLDS---NKDGLKL-EAMKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYA 107
            :||:.|.:   ..|.|:. ..:.::|..:.:|.|.|.:|..:||...:.:|..|||||:|:..||
 Frog    12 ELKRALSNPNIQADRLRYRNVIHKVIRHMTQGVDVSSVFMEMVKASATVDIVQKKLVYLYMCTYA 76

  Fly   108 EEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAA 172
            .::.|||||:|:|..:...|||.::|..|||.:.::|:..|:..:...|.:...|.:.|||:.|.
 Frog    77 CQKPDLALLAINTLCKDCSDPNPMVRGLALRSMCNLRMPGIIEYIQQPIHNGLRDKASYVRRVAV 141

  Fly   173 HAIPKLYSLDADQKDELVMVIE--KLLSDRTTLVVGSAVMAFDEVCP-ERVDLIHKNY-RKLCNF 233
            ....|::|...|.:.:.|:|.|  .||.|...:||.:.:.|.:|:.. |...:|:|.. ..|.|.
 Frog   142 LGCSKMHSQQGDVEVDGVVVNELYSLLRDPDPIVVVNCLRALEEILKGEGGVVINKPIAHHLLNR 206

  Fly   234 LLDVDEWGQVIIINMLTRYARTQFVDPNADDE--DLVNDGLGETPVSERFYDESSHSSSHSDDGS 296
            :.::|:|||..::..|.||      :|..:||  |::|       :.:.|               
 Frog   207 MAELDQWGQSEVLGFLLRY------NPKTEDELFDILN-------LLDNF--------------- 243

  Fly   297 SDDEKNKSSTNNKNNGGGNGSRTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMAVAQLYHH 361
                                                           |:|.:.||||...:|:..
 Frog   244 -----------------------------------------------LKSNHTSVVMGATKLFLV 261

  Fly   362 VA---PKNEVQLIAKALIRLLRS----HKEVQSVVLNCIASMSTKRKAI------FEPHLKSFFV 413
            :|   |..:..::.:....||.:    .||:      |.|::...|:.:      |..|.|.||.
 Frog   262 LAVEFPNVQRDVLGRLKGPLLAASASESKEM------CFAALCHVREILRSMPGHFSSHYKKFFC 320

  Fly   414 RTSDPTHIKLLKLDILTNLASAGSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETC 478
            ..:||.:||..|:|||..|.:..::..:|.|.:...:..........|.||||.|   |..:|.|
 Frog   321 SYNDPHYIKSQKMDILCELVNDENVHNVLEELRICCTDISVQLAQTAIFAIGRIA---KTFSEKC 382

  Fly   479 LSGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHFEIITQMAKLIDYINVPAARAAIIWLIGEYN 543
            :..|..||..:.||:.:..:...:.|:........::...:....:.|.....:.|:|||:|.:.
 Frog   383 VKILSQLLEFNQEHITSAVIQTFRDLVWLCPQCIAKVCLALPGCEEIIQDNEGKRALIWLLGMHG 447

  Fly   544 EKVPLIAPDVLRKMAKSFVDE-----QDVVKLQVLNLGVKLYLTNP-EQTSLLCQYVFTLARYDP 602
            :.:. .||.:|    :.|||.     ...||:::|...|:|:|:.| |...:|.:.::.....:.
 Frog   448 DVIS-NAPYIL----EDFVDNIKTEISPTVKIELLTAVVRLFLSRPAECQDMLGRLIYYCIEEEI 507

  Fly   603 NYDVRDRARFLRQIIFPASGTSSVLSQHARQVFLASKPAPVPESKYRDGNNFQLGSLSHYLNMPA 667
            :..||||..|..:::  |||.:     .|:||..:.|..|.            |..|.:..:.|.
 Frog   508 DMAVRDRGLFYYRLL--ASGVN-----EAKQVMNSPKSDPT------------LSVLENQTDQPI 553

  Fly   668 AGYKELPAFPVIPPDSSVRN 687
            ..:  :|||..:.|...:::
 Frog   554 NTW--VPAFNTLMPLHDIKH 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rbNP_001162664.2 Adaptin_N 40..621 CDD:279882 147/602 (24%)
HEAT repeat 48..73 CDD:293787 6/28 (21%)
HEAT repeat 117..144 CDD:293787 9/26 (35%)
Cnd1 129..>252 CDD:289487 36/126 (29%)
HEAT repeat 147..179 CDD:293787 8/31 (26%)
HEAT repeat 188..214 CDD:293787 9/27 (33%)
AP3B1_C 881..1019 CDD:291462
ap4b1XP_002932178.2 Adaptin_N 11..522 CDD:366724 147/598 (25%)
HEAT repeat 86..113 CDD:293787 9/26 (35%)
HEAT repeat 120..150 CDD:293787 7/29 (24%)
HEAT repeat 159..185 CDD:293787 9/25 (36%)
B2-adapt-app_C 612..716 CDD:370272
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323029at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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