Sequence 1: | NP_001162664.2 | Gene: | rb / 31381 | FlyBaseID: | FBgn0003210 | Length: | 1160 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002932178.2 | Gene: | ap4b1 / 100495149 | XenbaseID: | XB-GENE-949306 | Length: | 724 | Species: | Xenopus tropicalis |
Alignment Length: | 670 | Identity: | 162/670 - (24%) |
---|---|---|---|
Similarity: | 287/670 - (42%) | Gaps: | 139/670 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 47 DLKQMLDS---NKDGLKL-EAMKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVYLVRYA 107
Fly 108 EEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSAADLSPYVRKTAA 172
Fly 173 HAIPKLYSLDADQKDELVMVIE--KLLSDRTTLVVGSAVMAFDEVCP-ERVDLIHKNY-RKLCNF 233
Fly 234 LLDVDEWGQVIIINMLTRYARTQFVDPNADDE--DLVNDGLGETPVSERFYDESSHSSSHSDDGS 296
Fly 297 SDDEKNKSSTNNKNNGGGNGSRTPSSPSNSYHIDVDHRLLLRQTKPLLQSRNASVVMAVAQLYHH 361
Fly 362 VA---PKNEVQLIAKALIRLLRS----HKEVQSVVLNCIASMSTKRKAI------FEPHLKSFFV 413
Fly 414 RTSDPTHIKLLKLDILTNLASAGSISLILREFQTYISSSDRSFVAATIQAIGRCASSIKEVTETC 478
Fly 479 LSGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHFEIITQMAKLIDYINVPAARAAIIWLIGEYN 543
Fly 544 EKVPLIAPDVLRKMAKSFVDE-----QDVVKLQVLNLGVKLYLTNP-EQTSLLCQYVFTLARYDP 602
Fly 603 NYDVRDRARFLRQIIFPASGTSSVLSQHARQVFLASKPAPVPESKYRDGNNFQLGSLSHYLNMPA 667
Fly 668 AGYKELPAFPVIPPDSSVRN 687 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rb | NP_001162664.2 | Adaptin_N | 40..621 | CDD:279882 | 147/602 (24%) |
HEAT repeat | 48..73 | CDD:293787 | 6/28 (21%) | ||
HEAT repeat | 117..144 | CDD:293787 | 9/26 (35%) | ||
Cnd1 | 129..>252 | CDD:289487 | 36/126 (29%) | ||
HEAT repeat | 147..179 | CDD:293787 | 8/31 (26%) | ||
HEAT repeat | 188..214 | CDD:293787 | 9/27 (33%) | ||
AP3B1_C | 881..1019 | CDD:291462 | |||
ap4b1 | XP_002932178.2 | Adaptin_N | 11..522 | CDD:366724 | 147/598 (25%) |
HEAT repeat | 86..113 | CDD:293787 | 9/26 (35%) | ||
HEAT repeat | 120..150 | CDD:293787 | 7/29 (24%) | ||
HEAT repeat | 159..185 | CDD:293787 | 9/25 (36%) | ||
B2-adapt-app_C | 612..716 | CDD:370272 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D323029at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.920 |