DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3556 and Cblif

DIOPT Version :10

Sequence 1:NP_572164.2 Gene:CG3556 / 31380 FlyBaseID:FBgn0029708 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_058858.1 Gene:Cblif / 29319 RGDID:62084 Length:421 Species:Rattus norvegicus


Alignment Length:443 Identity:98/443 - (22%)
Similarity:160/443 - (36%) Gaps:108/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 SGTPPEHQTIGQAPPTKGEQEAILRALDWLKEKRASDYGWGNDTHVVILAKELSGGRDPNDSVDG 210
            :||....|.....||   :|:..:..|..|.|...::....|.:  :::|..|:           
  Rat    20 AGTSTRAQRSCSVPP---DQQPWVNGLQLLMENSVTESDLPNPS--ILIAMNLA----------- 68

  Fly   211 HVQVIQELEDTLSVKEMEIEILAMLDRHHTLPKPLDLDKLARYVLALGSLCKDPKHFHGHDLVAT 275
                        |...:|.:.|.......:....|...:||..::||.|.|:||     ...|:.
  Rat    69 ------------STYNLEAQKLLTYQLMASDSADLTNGQLALTIMALTSSCRDP-----GSKVSI 116

  Fly   276 LQHHEP--------AQDIEF---ALTTLSACSSAAH----VRKRQIRRLLDIASGVTDQSVDAIA 325
            ||.:..        |:...|   ||..|:.|...:.    :..|..:.|:..:|..   |||..|
  Rat   117 LQKNMESWTPSNLGAESSSFYGPALAILALCQKNSEATLPIAVRFAKTLMMESSPF---SVDTGA 178

  Fly   326 MVILALRC------IVTDHRHRHLQHFVRRPARGLATLQDQ-------RGSFGSLRSTALAMQAL 377
            :..|||.|      :.:...:|.|.      .:.|..:.|.       .|..|.:.||.||||||
  Rat   179 VATLALTCMYNRIPVGSQENYRDLF------GQALKVIVDNISLRIKADGIIGDIYSTGLAMQAL 237

  Fly   378 QDLEYDPAGHWNRTAASRYILSRQRADGGWSEEPLQDGQEPDIGVGLTADIILALGWKGLGAVRA 442
            ......|...|: ...:.|.:.::...|.: :.|:.           .|.|:.:|..|....|..
  Rat   238 SVTPEQPTKEWD-CEKTMYTILKEIKQGKF-QNPMS-----------IAQILPSLKGKTYLDVPQ 289

  Fly   443 LQC--DHVIRESSDPTENGEPKLAVPFGLSSSAEESDAKNISYTYTLWVGSN----VTESFSLSL 501
            :.|  ||.:    .||....| ..||..:|         ||:..||:   :|    |...|::::
  Rat   290 VTCGPDHEV----PPTLTDYP-TPVPTSIS---------NITVIYTI---NNQLRGVDLLFNVTI 337

  Fly   502 -VSPKNTSFFKAMTQAAE-MDPRFIFEAREWPNGHYVHTLYGKKEEPRGYHYW 552
             ||.|:.|...|:.:.|: .:..|.||......|..|.::....|..:...||
  Rat   338 EVSVKSGSVLLAVLEEAQRRNHMFKFETTMTSWGLIVSSINNIAENVKHKTYW 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3556NP_572164.2 Cobalamin_bind <249..>377 CDD:460073 40/155 (26%)
Prenyltrans 389..>419 CDD:395346 3/29 (10%)
CblifNP_058858.1 Cobalamin_bind 29..312 CDD:460073 73/342 (21%)

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