DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and tbr1

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001072587.1 Gene:tbr1 / 780042 XenbaseID:XB-GENE-942241 Length:677 Species:Xenopus tropicalis


Alignment Length:675 Identity:201/675 - (29%)
Similarity:279/675 - (41%) Gaps:157/675 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 TSQKQGHHLSTTEEPPSPA--GTPPPTIVGLPPIPPPNNNSSSS-----SSNNSASAAAHPSHHP 198
            |:|.:....|..::.|...  ....|.:.|:..|....:.|::.     .|:.|.|||:.|:   
 Frog    61 TNQSEADSFSGAKDAPGDGQRSKLSPVLDGVSEIRHSFDGSAADRYLLPQSSQSQSAASAPT--- 122

  Fly   199 TAAHHSPSTGAAAPPAGATGLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHP 263
            |.....||...||.||.:.|.|.....||                |.....|..:|.|:.|   |
 Frog   123 TTMFPYPSQHGAAHPAFSLGSPGRYMAHH----------------PVIANGAYNSLLGNSA---P 168

  Fly   264 GLYPGGGLRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPLRALQPEDDGVVDDP 328
            ..||..|          :|::...|.:|..|.....::.     .|.:.|.:|            
 Frog   169 QGYPSAG----------YPYSQQYGHSYQAAPFYQFSAT-----QPGLVPGKA------------ 206

  Fly   329 KVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNS 393
            :|.|..:.||.|||:..|||:|||.||:|||.:.|.:||||..|.|.:.:|::.||...::|...
 Frog   207 QVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGG 271

  Fly   394 RWMVAGKADPEMP-KRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGFVSTTILNSMHKYQ 457
            :|:..||||..:. .|:|:|||||.||..||::.:||.|:|||||....:......:|.|:||||
 Frog   272 KWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKMKLTNNKGASNNNGQMVVLQSLHKYQ 336

  Fly   458 PRFHLVRAN----DILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDNNPFAKGFRDTGAGK 518
            ||.|:|..|    :....| ...:|:.|.||:|||||||||..|||||||:|||||||||     
 Frog   337 PRLHVVEVNEDGTEDTSQP-GRVQTFTFPETQFIAVTAYQNTDITQLKIDHNPFAKGFRD----- 395

  Fly   519 REKKQALMSN-----RGSDSDKLNPTHVSSSRAPLHLG-----------------------HAGR 555
                     |     .|.|.|:|.|:...|.|:.:..|                       |   
 Frog   396 ---------NYDTIYTGCDLDRLTPSPNDSPRSQIVPGARYSMASTFLQDQFVSNYAKSRFH--- 448

  Fly   556 PP---------HLHPHA-ALLDNQQDDDDKLLDVVGPPQSP----LLPLSHSLQQMHAHQHSAAL 606
            ||         ...||. .||..||.:|.      |.| ||    :.|.::.|....|..:.|| 
 Frog   449 PPGAVPGPGTDRSVPHTNGLLSPQQGEDP------GAP-SPQRWFVTPANNRLDFTSASAYDAA- 505

  Fly   607 AAWFNHLAGAGAGASEHAAAA--AANASAEDALRRRLQADADVERDGSDSS---CSESVGGS--- 663
                ...||..|....:|||.  |..........|.|...:|....|:.|.   |::|  ||   
 Frog   506 ----TDFAGNAATLLSYAAAGVKALPLPGGGCTARPLGYYSDPTGWGARSPPQYCTKS--GSVLP 564

  Fly   664 ---TGG---AFRPTSTGSPKEAVGAAAAAAAAGLNPGGGSYPSPNISVGPPIHPSPHLLPY-LYP 721
               |||   |..|..|||.:     ..:.||...:|.|......::|....|...|.:... ...
 Frog   565 CWATGGRMAATNPYLTGSEE-----VESLAATDRSPLGEDTKPKDLSDSSWIETPPSIKSMDSSD 624

  Fly   722 HGLYPPPHLGLL--HNPAAAAAMSP 744
            .|:|.......|  .:||.:.:.||
 Frog   625 SGIYEQAKRRRLSPSDPAVSGSSSP 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 11/57 (19%)
T-box 330..513 CDD:279278 92/187 (49%)
tbr1NP_001072587.1 TBOX 205..398 CDD:238106 96/219 (44%)
T-box_assoc 420..675 CDD:292794 58/252 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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