DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and tbx3

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001027524.1 Gene:tbx3 / 613116 XenbaseID:XB-GENE-1018231 Length:701 Species:Xenopus tropicalis


Alignment Length:819 Identity:320/819 - (39%)
Similarity:396/819 - (48%) Gaps:225/819 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 SASAAAHPSHHPTAAHHSPSTGAAAPPAGATGLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAAL 251
            |.||.|   :||..:|.:|....:|.               |..|           ||:|||.||
 Frog    11 SGSAMA---YHPFLSHRAPDFAMSAV---------------LGHQ-----------PPFFPALAL 46

  Fly   252 AALAGSPAGPHPGLYPGGGLRFPPHHPG--AHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPL 314
                 .|.|....|            ||  |.|....|..|   ||..:..|::.||....:|||
 Frog    47 -----PPNGAALSL------------PGALAKPIMDQLVGA---AETGIPFSSLGHQAAAHLRPL 91

  Fly   315 RALQPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLD 379
            :.|:||:: |.|||||.||||||||:|||.|||||||||||:|||..|.|.||||.|||||||:|
 Frog    92 KTLEPEEE-VEDDPKVHLEGKDLWEQFHKRGTEMVITKSGRRMFPPFKVRCSGLDKKAKYILLMD 155

  Fly   380 IVAADDYRYKFHNSRWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGF 444
            ||||||.||||||||||||||||||||||||||||||.||||||.|||:||||||||||||||||
 Frog   156 IVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGF 220

  Fly   445 VSTTILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDNNPFAK 509
               ||||||||||||||:|||||||||||||||||||.||||||||||||:||||||||||||||
 Frog   221 ---TILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETEFIAVTAYQNDKITQLKIDNNPFAK 282

  Fly   510 GFRDTGAGKREKKQ--ALMS-----------NRGSDSDKLNPT------HVSSSRAPLHLGHA-- 553
            ||||||.|:|||::  ||.|           |..||......|      ..||..||. :|.:  
 Frog   283 GFRDTGNGRREKRKQLALQSMRPYDDHQKKDNGSSDESSSEQTAYKCFAQTSSPTAPA-VGTSSL 346

  Fly   554 -GRPPHLHPHAALLDNQQDDDDK--------------------LLDVVGPPQSPLLPL-SHSLQQ 596
             |.||.        |.:.|::.:                    ..::..||::|...| |.|.:|
 Frog   347 KGVPPS--------DGESDEESRDEGGPDTGESTKISTTTSEDCRELASPPRAPHSDLGSRSREQ 403

  Fly   597 MHA-------HQHSAALAAWFNHLAGAGAG----ASEHAAAAAANASAEDALR-RRLQADADVER 649
            ...       .:||.      .|::.:.:|    ..|..:.|..:..||::.| :.......|:.
 Frog   404 SSRTGKSSPDSRHSP------GHISSSSSGRILSIEELKSPARDSHKAEESQRSKEAFPPLTVQT 462

  Fly   650 DGSDSSCS----ESVG---GSTG-------GAFRPTSTGSPKEAVGAAAAAAAAGLNP-----GG 695
            |.|....|    :::|   |.||       ||..|........|:|.|.::.|||:||     .|
 Frog   463 DSSAHLLSQGHLQNLGFPPGLTGQQFFNPLGASHPLLFHPSHFAMGGAFSSMAAGMNPLLASVSG 527

  Fly   696 GSYPSPNI--------------SVGPPIHPSPHLLPYLYPHGLYPPPHLGLLHNP----AAAAAM 742
            .|....:|              |...|.|....:|.   ..||...|..||...|    |||||.
 Frog   528 ASSGVNSIDSTVMASSSQGLAGSSALPFHLQQQVLA---SQGLAMSPFGGLFSYPYTYMAAAAAA 589

  Fly   743 SPAGLNPGLLFNAQLALAAQHPALFGHAYAAAGHTPVSPLQGLKSHRFSPYSLPGSLGSAFDAVT 807
            |.|              ..:||.|          ..|.|     ..|:||||.|.........:|
 Frog   590 SSA--------------VHRHPFL----------NAVRP-----RLRYSPYSFPMPFAEGSSLLT 625

  Fly   808 PGSNANRSGDPPGGGGGGLGGGVVENGPRSLSSSPRPRPASHSPPTRPISMSPT-TPPSLMKQPR 871
               .|..|.|                |..||.||    ||:.:..|...|.:|| :..|:...|:
 Frog   626 ---TALHSLD----------------GKASLLSS----PAATALDTELSSRTPTLSSGSVSLSPK 667

  Fly   872 GGGAGAGVAQSQHSPSELKSMEKMVNGLEVQHNGSAAAA 910
                   :...:.:.|||::::::|:||:.:...|.:.:
 Frog   668 -------LCPEKEASSELQNIQRLVSGLDSKQERSRSGS 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 16/59 (27%)
T-box 330..513 CDD:279278 162/182 (89%)
tbx3NP_001027524.1 T-box 106..286 CDD:366363 162/182 (89%)
TBX 304..384 CDD:372213 14/88 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 338 1.000 Domainoid score I1114
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 386 1.000 Inparanoid score I1978
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002445
OrthoInspector 1 1.000 - - otm47785
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1628
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.050

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