DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and tbr1b

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001108562.1 Gene:tbr1b / 58042 ZFINID:ZDB-GENE-000323-1 Length:676 Species:Danio rerio


Alignment Length:545 Identity:179/545 - (32%)
Similarity:235/545 - (43%) Gaps:115/545 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 HLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGP-HPGLYPGGGLRFPPHHP----GA------ 280
            :|..|..|.|   |.|...||..       |..|| ||........|:..|||    ||      
Zfish   105 YLLSQSSQVQ---PSPTTMFPYP-------SQHGPTHPAFSIASPSRYMAHHPVITNGAYNSLLS 159

  Fly   281 -----------HPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPLRALQPEDDGVVDDPKVTLEG 334
                       :|:|...|.||........:||.|     .:.|.:|            :|.|..
Zfish   160 NSSPQGYATAGYPYAQQYGHAYQGTAFYQFSSAQA-----GLVPGKA------------QVYLCN 207

  Fly   335 KDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNSRWMVAG 399
            :.||.|||:..|||:|||.||:|||.:.|.:||||..|.|.:.:|::.||...::|...:|:..|
Zfish   208 RALWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCG 272

  Fly   400 KADPEMP-KRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGFVSTTILNSMHKYQPRFHLV 463
            |||..:. .|:|:|||||.||..||::.:||.|||||||....:......:|.|:||||||.|:|
Zfish   273 KADTNVTGNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGATNNTGQMVVLQSLHKYQPRLHVV 337

  Fly   464 RAN----DILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDNNPFAKGFRD------TGA-- 516
            :.|    :....| ...:|:.|.||:|||||||||..|||||||:|||||||||      ||.  
Zfish   338 QVNEDGTEDTSQP-GRVQTFTFPETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDTVYTGCDI 401

  Fly   517 -------GKREKKQALMSNR-GSDSDKLNPTHVSS-SRAPLHLGHAGRPPHLHPHAALLDNQQDD 572
                   |...:.|.:.|.| ......|....||| :::..|.|..|.|                
Zfish   402 DRLTPSPGDSPRSQIMPSARYAMTGSFLQDQFVSSYAKSRFHPGVGGAP---------------- 450

  Fly   573 DDKLLDVVGPPQSPLLPLSHSL--QQMHAHQHSAALAAWF-----NHLAGAGAGASEHAAAAAAN 630
                    |..:|  :|||:||  .|.......|:...||     |.|..|   ||.:.|||||:
Zfish   451 --------GTDRS--VPLSNSLLSPQQTEETTVASPQRWFVTPANNRLDFA---ASAYDAAAAAD 502

  Fly   631 ASAEDALRRRLQADADVERDGSDSSCSESVGGSTG-----GAFRPTSTGSPKEAVGAAAAAAAAG 690
            .:...|......|..........:.||....|..|     |...|....|...:|.:...:.:.|
Zfish   503 FAGNAATLLSYAAAGVKALPLPGAGCSNRPLGYYGEPPGWGTRTPPQYCSKSSSVLSCWPSNSVG 567

  Fly   691 LNPGGGSYPSPNISVGPPIHP--SP 713
            ......||..|.:..|.||.|  ||
Zfish   568 SRTTASSYLVPGLEDGDPIAPERSP 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 20/79 (25%)
T-box 330..513 CDD:279278 93/187 (50%)
tbr1bNP_001108562.1 TBOX 200..393 CDD:238106 96/205 (47%)
T-box_assoc 415..673 CDD:292794 52/207 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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