DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and Eomes

DIOPT Version :10

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001414322.1 Gene:Eomes / 316052 RGDID:1359706 Length:708 Species:Rattus norvegicus


Alignment Length:579 Identity:180/579 - (31%)
Similarity:241/579 - (41%) Gaps:147/579 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 PSPAGTPPPTIVGLPPIPPPNNNSSSSSSNNSASAAAHP------SHHPTAAHHSPSTGAAAPPA 214
            |..||:..|...|........:::.:..:..||||.|.|      ...|.|....||...||..|
  Rat    71 PCQAGSAEPAGAGAGAPAAMLSDADAGDTFGSASAVAKPGPPDGRKGSPCAEEELPSAATAAATA 135

  Fly   215 GAT---------GLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHPGLYP-GG 269
            ..:         .||.|.|        |..:..||.....:||||.||        |..:|| ..
  Rat   136 RYSMDSLSSERYYLPSPGP--------QGSELAAPCSLFQYPAAAGAA--------HGSVYPASN 184

  Fly   270 GLRFP-----PHHPGAHPHA------HHLGSAYTTAEDVVLASAVA--------HQLHPAMRPLR 315
            |.|:|     |  ||..|.|      ...|.|..:......:...|        .|..|...|..
  Rat   185 GARYPYGSMLP--PGGFPAAVCPPARSQFGPATGSGSGAGSSGGGAGGPGGYPYGQGSPLYGPYA 247

  Fly   316 ALQPEDD----GVVDDP------KVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDA 370
            .......    |.:..|      .|.|..:.||.|||:..|||:|||.||:|||.:.|.::||:.
  Rat   248 GTSAAGSCGGLGGLGVPGSGFRAHVYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNINGLNP 312

  Fly   371 KAKYILLLDIVAADDYRYKFHNSRWMVAGKADPEMP-KRMYIHPDSPTTGEQWMQKVVSFHKLKL 434
            .|.|.:.:::|.||...::|...:|:..||||..|. .:||:||:||.||..||::.:||.||||
  Rat   313 TAHYNVFVEVVLADPNHWRFQGGKWVTCGKADNNMQGNKMYVHPESPNTGSHWMRQEISFGKLKL 377

  Fly   435 TNNISDKHGFVSTTILNSMHKYQPRFHLVRAN----DILKLPYSTFRTYVFKETEFIAVTAYQNE 495
            |||....:......:|.|:||||||.|:|...    :.|..|..| :|:.|.||:|||||||||.
  Rat   378 TNNKGANNNNTQMIVLQSLHKYQPRLHIVEVTEDGVEDLNEPSKT-QTFTFSETQFIAVTAYQNT 441

  Fly   496 KITQLKIDNNPFAKGFRDTGAGKREKKQALMSNRGSDSDKLNPTHVSSSRAPLHLGHAGR----- 555
            .|||||||:|||||||||       ...::.:  .|::|:|.|:...|.|:. .:...||     
  Rat   442 DITQLKIDHNPFAKGFRD-------NYDSMYT--ASENDRLTPSPTDSPRSH-QIVPGGRYGVQN 496

  Fly   556 ---PPHLH--PHA-------------ALLDNQQDDDDKLLDVVGPPQ------------------ 584
               .|.::  |.|             .||..||.:     :|..|||                  
  Rat   497 FFPEPFVNTLPQARYYNGERTVPQTNGLLSPQQSE-----EVANPPQRWLVTPVQQPVTNKLDIG 556

  Fly   585 --------SPLLPL---SHSLQQMHAHQH-----SAALAAWFNHLAGAGAGASEHAAAA 627
                    |.|||.   |..||..||..:     ..|:|.|      .|.||.:...||
  Rat   557 SYESEYSSSTLLPYGIKSLPLQTSHALGYYPDPTFPAMAGW------GGRGAYQRKMAA 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:337907 17/77 (22%)
T-box_TBX2_3-like 326..513 CDD:410314 93/197 (47%)
EomesNP_001414322.1 None

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