DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and Tbx19

DIOPT Version :10

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001381159.1 Gene:Tbx19 / 304935 RGDID:1310145 Length:448 Species:Rattus norvegicus


Alignment Length:561 Identity:168/561 - (29%)
Similarity:233/561 - (41%) Gaps:151/561 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 VAHQLHPAMRPLRALQPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSG 367
            |:..|:.....|:|.:.:.|......::.||...||::|.::..||::||:||:|||.:|..|:|
  Rat    16 VSRLLNVVESELQAGREKGDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRMFPVLKISVTG 80

  Fly   368 LDAKAKYILLLDIVAADDYRYKFHNSRWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKL 432
            ||..|.|.||||.|..|.:|:|:.|..|:.|||.:......:|||||||..|..||:..:||.|:
  Rat    81 LDPNAMYSLLLDFVPTDSHRWKYVNGEWVPAGKPEVSSHSCVYIHPDSPNFGAHWMKAPISFSKV 145

  Fly   433 KLTNNISDKHGFVSTTILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKETEFIAVTAYQNEKI 497
            ||||.:|..    ...:|||:|||:|:.|:||.....::..:.    .|.||:||||||||||:|
  Rat   146 KLTNKLSGG----GQIMLNSLHKYEPQVHIVRVGGAHRMVMNC----SFPETQFIAVTAYQNEEI 202

  Fly   498 TQLKIDNNPFAKGFRDTGAGKREKKQALMSNRGSDSDKLNPTHVSSSRAPLHLGHAGRPPHLHPH 562
            |.|||..|||||.|.|.    :|:...          |..|..||.|:   |:.::      |..
  Rat   203 TALKIKYNPFAKAFLDA----KERNHL----------KEIPEAVSESQ---HVTYS------HLG 244

  Fly   563 AALLDNQQDDDDKLLDVVGPPQ----SPL-LPLSHSLQQMHAHQHSAALAAWFNHLAGAGAGASE 622
            ..:|.|...     :...|...    :|| ||..|:       :|..      .|.||       
  Rat   245 GWILSNPDG-----MCTTGSANYQYATPLPLPAPHT-------RHGC------EHYAG------- 284

  Fly   623 HAAAAAANASAEDALRRRLQA---DADVERDGSDS-----SCSESVGGSTGGAFRPTSTGSPKEA 679
                          ||...||   .|.:.|:.|.|     |.|.::...:|    |.|..|...|
  Rat   285 --------------LRGHRQAPYPSAYMHRNHSPSVNLIESSSNNLQVFSG----PESWTSLPSA 331

  Fly   680 VGAAAAAAAAGLNPGGGSYPSPNISVGPPIHPSPHLLPYLY--PHGLYPPPHLGL-LHNPAAAAA 741
                         |.||....|:.|  .||:|.|...|.|:  .:|...|...|. :|..|:...
  Rat   332 -------------PHGGILSVPHTS--GPINPGPSPYPCLWTISNGGGGPVASGSEVHASASGTF 381

  Fly   742 M--SPAGLNPGLLFNAQLALAA-----QHPALFGHAYAAAGHTPVSPLQGLKSHRFSPYSLPGSL 799
            :  ||...:|..|...|...:|     ..|:|...|        ||....:.||     .|||  
  Rat   382 LLGSPTVTSPSSLLPTQATTSAGVEVLGEPSLTSIA--------VSTWTAVASH-----PLPG-- 431

  Fly   800 GSAFDAVTPGSNANRSGDPPGGGGGGLGGGVVENGPRSLSS 840
                                .||.||.|    .:.|.||.|
  Rat   432 --------------------WGGPGGAG----RHSPSSLDS 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:337907 4/14 (29%)
T-box_TBX2_3-like 326..513 CDD:410314 86/186 (46%)
Tbx19NP_001381159.1 T-box_TBX19-like 36..218 CDD:410327 86/189 (46%)

Return to query results.
Submit another query.