DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and Tbx4

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:XP_006247098.1 Gene:Tbx4 / 303399 RGDID:1309057 Length:555 Species:Rattus norvegicus


Alignment Length:560 Identity:191/560 - (34%)
Similarity:250/560 - (44%) Gaps:159/560 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 PAAALAALAGS-------PAGPHPGLYPGGGLRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVA 304
            |..||...:.|       ||...||| .|..|..||            |.....|.....|:|.|
  Rat    17 PGPALGETSNSNNTNVPEPALATPGL-SGTALSSPP------------GQGADVAAAAAAAAAAA 68

  Fly   305 HQLHPAMRPLRALQPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLD 369
            .|                 .:::.||.|..|:||:|||:.||||:|||:||:|||..|.:|:|::
  Rat    69 EQ-----------------TIENIKVGLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMN 116

  Fly   370 AKAKYILLLDIVAADDYRYKFHNSRWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKLKL 434
            .|.|||||:|||.|||:||||.:::|||||||:|.||.|:|:|||||.||..||:::|||.||||
  Rat   117 PKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKL 181

  Fly   435 TNNISDKHGFVSTTILNSMHKYQPRFHLVRA--NDILKLPYSTFRTYVFKETEFIAVTAYQNEKI 497
            |||..|..|.:   |||||||||||.|:|:|  |:......:.|.|:||.||.||:||:|||.||
  Rat   182 TNNHLDPFGHI---ILNSMHKYQPRLHIVKADENNAFGSKNTAFCTHVFPETSFISVTSYQNHKI 243

  Fly   498 TQLKIDNNPFAKGFRDTGAGKREKKQALMSNRGSDSDKLNPTHVSSSRAP----------LHLGH 552
            |||||:||||||||                 ||||...|....:.|...|          |....
  Rat   244 TQLKIENNPFAKGF-----------------RGSDDSDLRVARLQSKEYPVISKSIMRQRLVSSQ 291

  Fly   553 AGRPPHLHP----HAALLDNQQDDDDKLLDVVGPPQSPLLPLSHSLQQMHAHQHSAALAAWFNHL 613
            ....|.:.|    |.||...|.::...:......||.  |||:     ....|..::|   |.|.
  Rat   292 LSAKPDVSPLHSTHQALQHYQYENGAHMQFAAAEPQD--LPLN-----TFPTQRDSSL---FYHC 346

  Fly   614 AGAGAGASEHAAAAAANASAEDALRRRLQADADVERDG-------------SDSSCSESVGGSTG 665
            ....|.::.|......        |..|:..:.|..|.             |.|.|||.      
  Rat   347 LKRRADSARHLDLPCK--------RSYLETPSSVGDDHYFRSPPPYDQQMLSPSYCSEV------ 397

  Fly   666 GAFRPTSTGSPKEA-VGAAAAAAAAGLNPGGGSYPSP---NI--SVGP------------PIHPS 712
                     :|:|| :.:::....||::......|.|   |:  ||.|            |..|.
  Rat   398 ---------TPREACMYSSSGPEIAGVSAVDDLPPPPLSCNMWTSVSPYTSYSVQTMETVPYQPF 453

  Fly   713 P-H-----LLPYLYPHGLYPPPHLGLLHNPAAAAAMSPAG 746
            | |     ::|.|                |.||.:..|.|
  Rat   454 PTHFTATTMMPRL----------------PIAAQSAQPPG 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 13/57 (23%)
T-box 330..513 CDD:279278 115/184 (63%)
Tbx4XP_006247098.1 TBOX 74..263 CDD:238106 120/208 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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