DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and tbx-2

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001370674.1 Gene:tbx-2 / 175698 WormBaseID:WBGene00006543 Length:423 Species:Caenorhabditis elegans


Alignment Length:471 Identity:193/471 - (40%)
Similarity:244/471 - (51%) Gaps:134/471 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 PSTGAAAPPAGATGLPPPTPPHHLQQQQQQQQHPAPPPPPYFPAAALAALAGSPAGPHPGLYPGG 269
            |..||.....||.|                     |||..:|....    ||.|.||        
 Worm    16 PFMGAGVGGPGAGG---------------------PPPNLFFSMLQ----AGFPPGP-------- 47

  Fly   270 GLRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPLRALQPEDDGVVDDPKVTLEG 334
                             :||                            .||||||.|||||.|:.
 Worm    48 -----------------VGS----------------------------PPEDDGVTDDPKVELDE 67

  Fly   335 KDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVAADDYRYKFHNSRWMVAG 399
            ::||::|.:.|||||||||||::||..:.::||||.|::|.:::|:|.||::||||:|||||:||
 Worm    68 RELWQQFSQCGTEMVITKSGRRIFPAYRVKISGLDKKSQYFVMMDLVPADEHRYKFNNSRWMIAG 132

  Fly   400 KADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGFVSTTILNSMHKYQPRFHLVR 464
            ||||||||.:|||||||:|||.||.|..:|||||||||||||||:   ||||||||||||.|:||
 Worm   133 KADPEMPKTLYIHPDSPSTGEHWMSKGANFHKLKLTNNISDKHGY---TILNSMHKYQPRLHVVR 194

  Fly   465 ANDILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDNNPFAKGFRDTGAGKREKKQALMSNR 529
            ..|...|.||||||:||:||||||||||||||:|:|||:||||||||||.||||||||:.|....
 Worm   195 CADRHNLMYSTFRTFVFRETEFIAVTAYQNEKVTELKIENNPFAKGFRDAGAGKREKKRQLHRMN 259

  Fly   530 GSDSDKLNPTHVSSSRAPLHLGHAGRPPHLHPHAALLDNQQDDDDKL------------------ 576
            | |:.:..|...:|  .|.|..|...           .|.:||:..|                  
 Worm   260 G-DATQSPPGKTAS--LPTHSPHPSE-----------SNSEDDEPTLKKCKPEPSQTPTTSSLST 310

  Fly   577 -----LDVVGPPQSPLLPLSHSLQQMHAHQHSAALAAW------------FNHLAGAGAGASEHA 624
                 |....|.:||...:...:..|:.:.....||.|            .|..|.|.:..|:|.
 Worm   311 STTPTLSAHHPLRSPQFCIPPPIDMMYQNMPMDLLAHWQMATLFPQFSMALNSPAAAASLLSKHL 375

  Fly   625 AAAAA----NASAEDA 636
            |.|::    .|::||:
 Worm   376 AKASSECKVEATSEDS 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 4/57 (7%)
T-box 330..513 CDD:279278 126/182 (69%)
tbx-2NP_001370674.1 T-box_TBX2_3-like 59..243 CDD:410314 130/186 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166762
Domainoid 1 1.000 280 1.000 Domainoid score I891
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3847
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002445
OrthoInspector 1 1.000 - - oto17978
orthoMCL 1 0.900 - - OOG6_105359
Panther 1 1.100 - - LDO PTHR11267
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2837
SonicParanoid 1 1.000 - - X1628
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.680

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