DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and sea-1

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_494611.1 Gene:sea-1 / 173710 WormBaseID:WBGene00004750 Length:376 Species:Caenorhabditis elegans


Alignment Length:437 Identity:90/437 - (20%)
Similarity:158/437 - (36%) Gaps:108/437 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 NNNNNNNNNTSQKQGHH----------LSTTEEPPSPAGTPPPTIVGLPPIPPPNNNSSSSSSNN 186
            |.||||.......:.:|          .|..:....|:.:.||:      :|..::...|||   
 Worm     6 NINNNNQKYPQSAEEYHKVLCNYFITLQSAMQSTSRPSSSSPPS------LPAVSSELLSSS--- 61

  Fly   187 SASAAAHPSHHPTAAHHSPSTGAAAPPAGATGLPPPTPPHHLQQQQQQ--------QQHPAPPPP 243
                      .||          .||.:.:..|.|         :|.|        .:.....|.
 Worm    62 ----------FPT----------NAPESSSRDLAP---------KQNQFTINVVLFDEKKKKNPE 97

  Fly   244 PYFPAAA--LAALAGSPAGPHPGLYPGGGLRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVAHQ 306
            ...||..  ||.|.......:|.        .||..|...|..     ....:|:|..:|:....
 Worm    98 ENLPANGDQLATLRSLMMQINPS--------SPPSIPATSPQL-----PLAESENVPESSSTLKD 149

  Fly   307 LHPAMRPLRALQPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAK 371
            ...::..:.....::|.|    |::|..::.|.|||::||||::..|||::||.:.::|||||..
 Worm   150 HKFSLNTMLFNVKKNDAV----KISLANQEQWAKFHEIGTEMMVFNSGRRLFPLLAYKVSGLDPH 210

  Fly   372 AKYILLLDIVAADDYRYKFHN--SRWMVAGKADPEMPKRMYIHPDSPTTGE-----QWMQKVVSF 429
            ..|...:.::....|:.::.:  .:|:     :....|:....|.|...|.     :.|...:..
 Worm   211 KLYCAGVHMIPDSAYKQEYDHDLQQWV-----NCLNQKKTIFKPTSEILGRIENGFKLMSLGIDM 270

  Fly   430 HKLKLTN-----------NISDKHGFVSTTILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKE 483
            ..:|:.|           ..|.|.....|..:...:||.|...:...:: ..:.........|.|
 Worm   271 SDVKIFNIAIRKKTPLQIEKSRKPNLDKTIEVLIQYKYLPVIKIYELSN-SGMEKKEIAQATFPE 334

  Fly   484 TEFIAVTAYQNEKITQLKIDNNPFAKGFRDTGAGKREKKQALMSNRG 530
            |.|:.|:.|:|:||.::|...|.:.         :.::||.:|..||
 Worm   335 TSFVTVSIYRNQKIKEMKTLGNKYC---------RTDRKQIVMEQRG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 8/57 (14%)
T-box 330..513 CDD:279278 46/200 (23%)
sea-1NP_494611.1 TBOX 167..369 CDD:214656 50/220 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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