DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and tbx3b

DIOPT Version :9

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:XP_002662050.2 Gene:tbx3b / 100334188 ZFINID:ZDB-GENE-060531-144 Length:594 Species:Danio rerio


Alignment Length:644 Identity:245/644 - (38%)
Similarity:302/644 - (46%) Gaps:178/644 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 PAGP-----HPGLYPGGGLRFPPHHPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAMRPLRAL 317
            ||.|     .|.|  |...:|.|...|....|:.|.|:        :..|:.....||:...|..
Zfish     8 PASPTDFTISPML--GQQAQFFPVGYGHQQFANALQSS--------IRLALKESAAPALLSGRTR 62

  Fly   318 QPEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVA 382
            .|... ..|:|.|.|||.:||.:|||:|||||||||||:|||..|.|.||.|.||:||||:||||
Zfish    63 DPVQT-PEDEPVVHLEGNELWGQFHKVGTEMVITKSGRRMFPAFKVRCSGFDRKARYILLMDIVA 126

  Fly   383 ADDYRYKFHNSRWMVAGKADPEMPKRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGFVST 447
            :|||||||||.|||||||||||||||||||||||:||||||.|.|:||||||||||||||||   
Zfish   127 SDDYRYKFHNCRWMVAGKADPEMPKRMYIHPDSPSTGEQWMSKAVTFHKLKLTNNISDKHGF--- 188

  Fly   448 TILNSMHKYQPRFHLVRANDILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDNNPFAKGFR 512
            ||||||||||||||:|||||:||||||||:||||.||||||||||||||||||||||||||||||
Zfish   189 TILNSMHKYQPRFHIVRANDVLKLPYSTFKTYVFPETEFIAVTAYQNEKITQLKIDNNPFAKGFR 253

  Fly   513 DTGAGKREKKQALMSNR-------------GSDSDKLN--------------------------- 537
            :||.|:|||::.::..|             .|..|:::                           
Zfish   254 ETGNGRREKRKQMLHQRCEVEPKKASVLTDDSSFDQISSNYLIQESNVVTSTSTDTNESDIDGFG 318

  Fly   538 ------------------------PTHVSSSRAPLHLGHAGRPPHLH---------PHAALLDNQ 569
                                    .|.|..|:...:.....|.|.::         |....||.:
Zfish   319 DEKESNEVESIQSISQDEQNSREISTTVQESKDDPNEEIGDRNPEINSKKQHSVEQPAHLPLDKK 383

  Fly   570 QDDDDKL-LDVVGPPQSPLL------PLSHSLQQMHAHQHSAALAAWFNHLAGAGAGASEHAAAA 627
            ..:..|. .||....|...|      |....:..:....|..:....||::......|||...:.
Zfish   384 HAEQQKFAADVTDASQKDSLARHFYFPTPGLINSLRLPSHVLSNLCQFNYVGTLPLLASEATGSW 448

  Fly   628 AANASAEDALRRRLQADADVERDGSDSSCSESVGGSTG--------GAFRPTSTG---------- 674
            ....|.|.            |..|..:|.|.|....||        ...|.||.|          
Zfish   449 IPRRSNEG------------EGQGYTTSVSSSQQRLTGMQDLPPNFQQHRMTSQGVLVSAQGNIF 501

  Fly   675 -SPKEAVGAAAAAAAAGLNPGGGSY-----PSPNISVGPPIHPSPHLLPYLYPHGLYPPPHLGLL 733
             .|::.:..:|.:::|      .||     |..|||..|...|.|  :| ::.||         .
Zfish   502 PYPQDYMTTSAGSSSA------ASYQVHRQPFFNISYRPQCRPYP--VP-VWVHG---------R 548

  Fly   734 HNPAAAAAMSPAG---LNPGLLFNAQLALAAQHPALFGHAYAAAGHTPVSPLQGLKSHR 789
            ..|...:.:.|.|   :|.                   ||..|   ||.|.|.|||:::
Zfish   549 KIPQTTSVLIPYGETDINE-------------------HASIA---TPGSTLFGLKANK 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:287988 14/62 (23%)
T-box 330..513 CDD:279278 154/182 (85%)
tbx3bXP_002662050.2 TBOX 74..256 CDD:238106 155/184 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 407 1.000 Inparanoid score I1860
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002445
OrthoInspector 1 1.000 - - otm26063
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1628
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
98.920

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