DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bi and eomes

DIOPT Version :10

Sequence 1:NP_001259238.1 Gene:bi / 31379 FlyBaseID:FBgn0000179 Length:1023 Species:Drosophila melanogaster
Sequence 2:NP_001122124.1 Gene:eomes / 100038065 XenbaseID:XB-GENE-479769 Length:667 Species:Xenopus tropicalis


Alignment Length:615 Identity:189/615 - (30%)
Similarity:257/615 - (41%) Gaps:126/615 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 NTSQKQGHHLSTTEEPPSPAGTPPPTIVGLPPIPPPNNNSSSSSSNNSASAAAHPSHHPTAAHHS 204
            :||...|..||.|.|..|.|.|           .|.|....|.|:....|.|.            
 Frog    64 STSTASGTMLSETGEAFSVAKT-----------LPDNGRKGSPSAEEELSTAV------------ 105

  Fly   205 PSTGAAAPPAGATGLPPPTPPHHLQQQQQQQQHPAP---PPPPYFPAAALAALAGSPAGPHPGLY 266
            ||   :||....:.|...:..::||.|.||.|..|.   .|...||.|         ...|..:|
 Frog   106 PS---SAPRYLDSSLQAASERYYLQPQGQQPQQAATELGSPCSIFPYA---------PPQHSAVY 158

  Fly   267 P-GGGLRFPPH---------HPGAHPHAHHLGSAYTTAEDVVLASAVAHQLHPAM---RPLRALQ 318
            | ||..|:||:         .|...|......|.|..::    |....:..:|..   ..|.||.
 Frog   159 PAGGAARYPPYGSMLPPAGFSPPVCPSRPQYSSGYQYSQ----APGTMYSPYPPAGTGSGLSALG 219

  Fly   319 PEDDGVVDDPKVTLEGKDLWEKFHKLGTEMVITKSGRQMFPQMKFRVSGLDAKAKYILLLDIVAA 383
            ....|.....:|.|..:.||.|||:..|||:|||.||:|||.:.|.::||:..|.|.:.:::|.|
 Frog   220 LPGGGAGVRAQVFLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNITGLNPTAHYNVFVEVVLA 284

  Fly   384 DDYRYKFHNSRWMVAGKADPEMP-KRMYIHPDSPTTGEQWMQKVVSFHKLKLTNNISDKHGFVST 447
            |...::|...:|:..||||..|. .::|:||:||.||..||::.:||.|||||||....:.....
 Frog   285 DPNHWRFQGGKWVTCGKADNNMQGNKVYVHPESPNTGAHWMRQEISFGKLKLTNNKGANNNSTQM 349

  Fly   448 TILNSMHKYQPRFHLVRA--------NDILKLPYSTFRTYVFKETEFIAVTAYQNEKITQLKIDN 504
            .:|.|:||||||.|:|..        ||..|     .:|:.|.||:|||||||||..|||||||:
 Frog   350 IVLQSLHKYQPRLHIVEVSEDGVEDLNDSAK-----SQTFTFPETQFIAVTAYQNTDITQLKIDH 409

  Fly   505 NPFAKGFRDTGAGKREKKQALMSNRGSDSDKLNPTHVSSSRAPLHLGHAGRPPHLHPHAALLDNQ 569
            |||||||||       ...::.:  .|:||:|.|:...|.|:  |....|....:.|..      
 Frog   410 NPFAKGFRD-------NYDSMYT--ASESDRLTPSPADSPRS--HQIVPGTRYSVQPFF------ 457

  Fly   570 QDDDDKLLDVVGPPQ----SPLLPLSHSL--QQMHAHQHSAALAAWFNHLAGAGAGASEHAAAAA 628
               .|:.::.:.|.:    ...:|.::.|  .|.:....:|....||          ......||
 Frog   458 ---QDQFVNNLPPARYYSGERTVPQANGLLSPQTNDEVANAPPQRWF----------VTPVQQAA 509

  Fly   629 ANASAEDALRRRLQADADVERDGSDSSCSESVGGSTGGAFRPTSTGSPKEAVGAAAAAAAAGLNP 693
            ||         :|...| .|.|.|..|..     :.|....|..|..|......||.|:.||...
 Frog   510 AN---------KLDMGA-YETDYSSGSLL-----TYGIKSLPIQTSHPMAYYPDAAFASMAGWGS 559

  Fly   694 GGGSYPS------PNISVGPPIHPSPHLLP 717
            .|.:|..      |..|...|...|..|||
 Frog   560 RGSTYQRKMTTTLPWSSRSSPSGFSEDLLP 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
biNP_001259238.1 Optomotor-blind <260..318 CDD:337907 16/70 (23%)
T-box_TBX2_3-like 326..513 CDD:410314 91/195 (47%)
eomesNP_001122124.1 T-box_TBR2 228..418 CDD:410331 91/194 (47%)
T-box_assoc 444..665 CDD:465042 38/180 (21%)

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