DRSC/TRiP Functional Genomics Resources

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Protein Alignment mei-9 and ercc4

DIOPT Version :10

Sequence 1:NP_525068.1 Gene:mei-9 / 31373 FlyBaseID:FBgn0002707 Length:961 Species:Drosophila melanogaster
Sequence 2:XP_002935520.3 Gene:ercc4 / 100145552 XenbaseID:XB-GENE-986815 Length:893 Species:Xenopus tropicalis


Alignment Length:923 Identity:380/923 - (41%)
Similarity:562/923 - (60%) Gaps:91/923 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 LLDYEKQMFLDLVEADGLLVCAKGLSYDRVVISILKAYSDSGNLVLVINSSDWEEQYYKSKIE-- 108
            ||::|.|:||||...|||::.|:||..||::.:.||.|.|.||||||:|::..||:|...::.  
 Frog     4 LLEHENQVFLDLFHEDGLVITARGLGIDRILQNFLKLYCDPGNLVLVLNTNTAEEEYLIDQLRSE 68

  Fly   109 -----PKYV-HEVASTATERERVYLEGGLQFISTRILVVDLLKQRIPIELISGIIVLRAHTIIES 167
                 |:.: :|||:  .||..||.:||:.|:::||||||.|..|||..||:||:|.:||.||||
 Frog    69 GVTHLPRIITNEVAT--GERYDVYTQGGVLFVTSRILVVDFLTDRIPANLITGILVYKAHKIIES 131

  Fly   168 CQEAFALRLFRQKNKTGFVKAFSSSPEAFTIGYSHVERTMRNLFVKHLYIWPRFHESVRTVLQPW 232
            |||||.|||:|||||.||:|||:.:|.||..|:..|||.|||||||.||:|||||.||.:.|...
 Frog   132 CQEAFILRLYRQKNKQGFIKAFTDNPVAFHTGFCQVERVMRNLFVKKLYLWPRFHVSVNSFLDKH 196

  Fly   233 KIQSIEMHVPISQNITSIQSHILEIMNFLVQEIKRINRTVDMEAVTVENCVTKSFHKILQAQLDC 297
            |.:.:|:||.::..:.:|||.||:|||..::|:||.|..:::|.:::||.:.|:|.|.::..||.
 Frog   197 KPEVVELHVSMTPAMLAIQSSILDIMNACLKELKRYNPALEVEDLSLENAIGKAFDKTIRHYLDP 261

  Fly   298 IWHQLNSQTKLIVADLKILRSLMISTMYHDAVSAYAFMKRYRSTEYAL-SNSGWTLLDAAEQIFK 361
            :||||.::||.:|.||||||:|:.....:|.|:....::..:::|.|. .||||..||::..:|.
 Frog   262 LWHQLGAKTKSLVQDLKILRTLLQYLSQYDCVTFLNLLESMKASEKAFGQNSGWLFLDSSTSMFV 326

  Fly   362 LSRQRVF--------------------NGQQEFEPEPCPKWQTLTDLLTKEIPGDMRRSRRSEQQ 406
            .:|.||:                    :|::|...|..|||:.|:::| |||..:.:.|......
 Frog   327 HARARVYHVPDSKAIKKSKQSDSNEKQDGKKELVLENNPKWEALSEVL-KEIEQENKNSEALGGP 390

  Fly   407 PKVLILCQDARTCHQLKQYLTQGGPRFLLQQALQHEVPVG---KLSDNYAKESQTRSAPPKNVSS 468
            .:|||...|.|||.||::|:..|....|  :.|.::. .|   |.|:.:.|..:..:|...|.|.
 Frog   391 GRVLICASDDRTCAQLREYIAVGAEALL--ERLYNKT-FGKDEKASEVWMKRRKAITAKGSNKSM 452

  Fly   469 NKELRREEVSGSQPPLAGMDELAQLLSESETEGQHFEESYMLTMTQPV------EVGPAAIDIKP 527
            ...|.::...|..         .|..:.::||         ||:||.:      |||..  |::.
 Frog   453 KTSLPKKPKEGKS---------KQKKNNTKTE---------LTLTQMIGKEEEDEVGKD--DVES 497

  Fly   528 DPDVSIFE---------TIPELEQFDVTAALASVPHQPYICLQTFKTEREGSMALEHMLEQLQPH 583
            ....|.||         .:|....:.:.....:|.|....|        ..|..|..:|.:::|.
 Frog   498 VSQESSFEEPKYEDLQLNLPSDSYYGILKEPLTVIHPLQGC--------SDSYGLTRVLHEIEPR 554

  Fly   584 YVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTSLRREKAAFEFIIDTKS 648
            |||:|:..::.:||||::.|.::.|    ::|||||:..:.|||.||||||:||.|||.:|..|:
 Frog   555 YVVLYDSELSFVRQLEIYRASKQKP----LRVYFLIYGGSTEEQRYLTSLRKEKEAFEQLIREKA 615

  Fly   649 KMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQATKETPKVIVDMREFRSDLPCLI 713
            .||||:.:||:.|....|.:  |...|.::|.:|:||||.....::|  :|||||||||:||.||
 Frog   616 SMVIPEERDGRDDTNLDLQR--DVTSTFDSADTRKAGGQVQNNVQQT--IIVDMREFRSELPSLI 676

  Fly   714 HKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSGRLYNQCVQMQRHYAKPILLIEFDQN 778
            |:||:::.|:|:.:|||||||||||||||:||||||||:||||.|||.|.|:|.:|:||||||.|
 Frog   677 HRRGIDIEPVTLEVGDYILTPDICVERKSVSDLIGSLNNGRLYTQCVSMCRYYKRPVLLIEFDPN 741

  Fly   779 KPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQT 843
            |||.|..|..:.|:.|:  .||..|:.|||||||:||::|.|||||||:||||||..:|:||..|
 Frog   742 KPFSLVSKNSIHQEISV--NDITSKIALLTLHFPRLRILWCPSPYATAELFEELKQNRPQPDSAT 804

  Fly   844 AAALGSDEPTAGEQLHFNSGIYDFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQE 908
            |.|:.:|..:..|...:|.|..||||::|||:.:|...:::...|:.:|...|.::|.|:|.:..
 Frog   805 AMAITADSESLPESEKYNPGPQDFLLKMPGVNAKNCRAIMKHVTSIAELTTLSLEKLTEILGNSN 869

  Fly   909 SAKLLYDILHVAH 921
            :||.||:.:..::
 Frog   870 NAKQLYEFMRTSY 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mei-9NP_525068.1 rad1 122..923 CDD:273163 345/839 (41%)
ercc4XP_002935520.3 rad1 86..884 CDD:273163 345/839 (41%)

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