DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fas2 and Dscam3

DIOPT Version :9

Sequence 1:NP_001284854.1 Gene:Fas2 / 31364 FlyBaseID:FBgn0000635 Length:885 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:956 Identity:208/956 - (21%)
Similarity:317/956 - (33%) Gaps:305/956 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QSPILEIYPKQEVQRKPVGKPLILTCR-PTVPEPSLVADLQW-KDNRNNTILPKPNGRNQPPMYT 91
            |.|::||:    |:|   |..:.|.|. ...|.|...    | :.:.:..:.|.|:  :|..:.:
  Fly   250 QKPVMEIH----VER---GNDVHLPCNIQGNPFPIFT----WYRVSDSAALYPIPS--SQRVILS 301

  Fly    92 ETLPGESLALMITSLSVEMGGKYYCTAS-YANTEILEKGVTIKTYVAITWTNAPENQYPTLGQDY 155
            .||      |:|.:......||:.|.|| ....:.:|..:::.:||::  ...|:.|....|...
  Fly   302 RTL------LLIKNADERDAGKWICQASNQFGEQRIEIRLSVNSYVSV--HILPQVQIVNSGGTA 358

  Fly   156 VVMCEVKADPNPTIDWLRNGDPIRTTNDKYVVQTN-------GLLIRNVQESDEGIYTC-----R 208
            ...|.........||||.||.|::..|.....:.|       .||::||...|.|:|.|     |
  Fly   359 NFNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLVENQR 423

  Fly   209 AAVIETGEL-LERTIRVEVFIQPEIISLPTNLEAVEGKPFAANCTARGKPVPEISWIRDATQ-LN 271
            |:.....|| |..|:       ||:|..........|...:..|:|.|.|.|:.:|:.|:.. ::
  Fly   424 ASAQAMAELKLGDTV-------PELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMD 481

  Fly   272 VATADRFQVNPQTGL-------VTISSVSQDDYGTYTCLAKNRAGVVDQKTKLNVLVRPQIYELY 329
            |:...||.:.....:       :.||.|..||.|.|.|:|.|..|.|....:|||...|.:..:.
  Fly   482 VSLHHRFAIGQFVDMSGDVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVYGPPYVRAIG 546

  Fly   330 NVTGARTKEIAITCRAKGRPAPAITFRRW-------GTQEEYTNGQQDDDPRIIL---EPNFD-- 382
            .:.....::|.:.|...|.|...|   ||       .|...|......|..::::   ||..|  
  Fly   547 PIKAVAGEDIIVHCPFAGYPVEQI---RWEKAHQELTTSNHYELASVADGGQLVIKNVEPGRDQG 608

  Fly   383 -------------------------------------EERGESTGTLRISNAE-------RSDD- 402
                                                 :|.|.:..|..:|:.:       :.|| 
  Fly   609 IYTCIVRSRAGEEARRDMQLNVNSPPVIEPFKFPKNLQEGGRAQITCAVSSGDMPIYFSWKKDDS 673

  Fly   403 -----------------------------GLYQCIARNKGADAYKTGHITVEFAPDFSH------ 432
                                         |.|.|.|.|..|....|..:.|..||.:.:      
  Fly   674 SIPSSLQITEKKEEFYSLLVFKDISARHSGKYTCYASNAAAKVNYTAELQVRVAPRWRYEPMDTA 738

  Fly   433 ------------MKELP-PVFSW------------------------------------------ 442
                        .:..| |..:|                                          
  Fly   739 IMLGNTISINCEAEGYPIPTITWFKGQGKGSKDFKPLSMRNHSLLLNLATDNDEGYYMCQATNEI 803

  Fly   443 ------------------EQRKANLS----------CLAMGIPNATIEWHWNGRKIKDLYDTNLK 479
                              ||...|:|          |.|.|....||.|..|..:| ||.:....
  Fly   804 GAGLKKTIRINVNEPARFEQSARNISSRRNDPVTLDCHAKGDEPITIGWTQNNGRI-DLNNFRFS 867

  Fly   480 I----VGTGPRSDLIVHPVTRQYYSGYKCIATNIHGTAEHDMQLKEARVPDFVSEAKPSQLTATT 540
            |    ...|..|.|.:....|.....|:|||.|.:|.||..:.|.....||..|..:..::.:.|
  Fly   868 IAEMKTEKGVDSQLTIGHSDRHDSGVYRCIAENPYGRAEQIIFLAVQERPDTPSHLEIFEVGSRT 932

  Fly   541 MTFDIRGPSTELGLPILAYSVQYK-----------EALNPDW----------STAYNRSWSPD-- 582
            :....|.| .:...|:|:|.|||:           .|...||          ||:.:||:..|  
  Fly   933 VKLSWRRP-FDGNSPVLSYLVQYQALKYLQSHGSLAAAGGDWNGHVINVSLPSTSISRSYDSDLR 996

  Fly   583 SPYIVEGLRPQTEYSFRFAARNQVGLGNWGVNQQQSTPRRSA--------PEEPKPLHNP----V 635
            ...||.||.|.|.:..|..|.|::              .|||        .:|..|...|    |
  Fly   997 ESAIVAGLTPATTFLIRMQAINEI--------------ERSAYTEAIVLKTQEEAPTEAPSNVQV 1047

  Fly   636 QHDKEEPVVVSPYSDHFELRWGVP---ADNGEPIDRYQIKYCPGVKISGTWTELENS---CNTVE 694
            |...|..::|:         |.:|   :.|||.|. |.:. |...|.:..:..:.||   ...|.
  Fly  1048 QTGGESELIVT---------WQIPPRESWNGELIG-YTVN-CSEEKQNINFISVVNSSLKSTIVS 1101

  Fly   695 VMETTSFEMTQLVGNTYYRIELKAHNAIGYSSP--ASIIMKTTRGI 738
            ...||...:..|...:.|.:.::|.|:.| |.|  |:|...|..|:
  Fly  1102 GWATTKATLRGLRKYSRYAVTIRAMNSFG-SGPWSAAIFGTTAEGV 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fas2NP_001284854.1 IG_like 39..133 CDD:214653 21/96 (22%)
IG_like 144..226 CDD:214653 27/94 (29%)
IGc2 152..209 CDD:197706 19/68 (28%)
I-set 230..319 CDD:254352 27/96 (28%)
IGc2 243..309 CDD:197706 21/73 (29%)
IG_like 330..424 CDD:214653 26/179 (15%)
IGc2 339..412 CDD:197706 23/158 (15%)
Ig 447..518 CDD:143165 25/84 (30%)
fn3 534..611 CDD:278470 26/99 (26%)
FN3 640..735 CDD:238020 25/102 (25%)
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 25/105 (24%)
Ig 264..334 CDD:143165 18/81 (22%)
I-set 345..433 CDD:254352 24/87 (28%)
Ig 358..431 CDD:143165 20/72 (28%)
Ig 456..533 CDD:143165 22/76 (29%)
IGc2 553..619 CDD:197706 13/68 (19%)
I-set 634..724 CDD:254352 13/89 (15%)
ig 645..712 CDD:278476 10/66 (15%)
IG_like 734..815 CDD:214653 3/80 (4%)
Ig 745..815 CDD:299845 3/69 (4%)
I-set 820..913 CDD:254352 28/93 (30%)
Ig 838..920 CDD:299845 26/82 (32%)
FN3 917..1033 CDD:238020 32/130 (25%)
FN3 1040..1142 CDD:238020 28/113 (25%)
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452263
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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