DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fas2 and lrit3b

DIOPT Version :9

Sequence 1:NP_001284854.1 Gene:Fas2 / 31364 FlyBaseID:FBgn0000635 Length:885 Species:Drosophila melanogaster
Sequence 2:XP_009305418.1 Gene:lrit3b / 100144406 ZFINID:ZDB-GENE-070424-130 Length:487 Species:Danio rerio


Alignment Length:458 Identity:97/458 - (21%)
Similarity:167/458 - (36%) Gaps:106/458 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LCSCSL--------IELTRAQSPILEIYP--------KQEVQRKPVGK---------PLILTCRP 56
            ||:|.|        :.....::|.|...|        |..::|..|.:         |.:|....
Zfish    55 LCTCVLQGRSDTKGLRTVLCKNPALTAIPIDLPNDTVKFRLERTSVSRIFRGAFSAMPELLYLWL 119

  Fly    57 T-----VPEP------SLVADLQWKDNRNNTILPKPNGRNQPPMYTETLPGESLALMITSLSVEM 110
            |     |..|      |.:.:|:...|..:| .|....|:.|.:.|..|....|| .|..|:|  
Zfish   120 TYNSISVLHPRSFTNLSSLHELRLDGNLLST-FPWEGLRDMPRLRTLGLHNNRLA-RIPLLAV-- 180

  Fly   111 GGKYYCTASYANTEILEKGVTIKTYVAITWTNAPENQYP---TLG-QDYVVMCEVKADPNPTIDW 171
              :|....:|.:.. ..:..|:...:...|..:..||..   .|| ||...:|:.:.  :..:|.
Zfish   181 --RYLRNVTYLDLS-SNRLSTLANDLTALWLFSDSNQTQRSFVLGLQDNPWVCDCRL--STLLDI 240

  Fly   172 LRNGDPIRTTNDKYVVQTNGLLIRNVQESDEGIYTCRAAVIETGELLERTIRVEVFIQPEIISLP 236
            .|..:......|:::..:..|.:..|......:..||                    :|.:::..
Zfish   241 SRGPESSLVLLDRFLTCSEPLDLAGVPFQSVELSRCR--------------------RPYVVTSA 285

  Fly   237 TNLEAVEGKPFAANCTARGKPVPEISWIRDA------------TQLNVATADRF--------QVN 281
            |.:.|:.|......|.|.|.|.|.:.||:.|            ||.::.| :||        |.:
Zfish   286 TKITALLGSTVLLRCEATGHPTPALMWIKSAKRNLYNQGCCKQTQSSLDT-ERFPKKLFGYVQES 349

  Fly   282 PQTG----LVTISSVSQDDYGTYTCLAKNRAGVVDQKTKLNVL-VRPQIYELYNVTGARTKEIAI 341
            |:.|    :|:::.:|..|.|.|.|.|:|.||:.:....|||: |..:..:..|....:|...:.
Zfish   350 PRVGVRWSVVSLNGISYSDAGEYRCRAQNMAGISEAVVSLNVVGVMAEYTDFKNSDQQQTTTKSD 414

  Fly   342 TCRAKGRPAPAITFRRWGTQEEYTNGQQDDDPRIILEPNF--DEERGESTGTLRISNAE---RSD 401
            :.|.|.:........|..|      |......|::..|..  |:.:.:.|...::|:..   .||
Zfish   415 SKRTKPKQKSKAMMPRNMT------GSLSPLKRVLKTPKAGRDKMKRDRTAVQKLSHRHFLTASD 473

  Fly   402 DGL 404
            |.|
Zfish   474 DSL 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fas2NP_001284854.1 IG_like 39..133 CDD:214653 24/113 (21%)
IG_like 144..226 CDD:214653 14/85 (16%)
IGc2 152..209 CDD:197706 10/57 (18%)
I-set 230..319 CDD:254352 31/112 (28%)
IGc2 243..309 CDD:197706 25/89 (28%)
IG_like 330..424 CDD:214653 16/80 (20%)
IGc2 339..412 CDD:197706 14/71 (20%)
Ig 447..518 CDD:143165
fn3 534..611 CDD:278470
FN3 640..735 CDD:238020
lrit3bXP_009305418.1 LRRNT 51..92 CDD:214470 7/36 (19%)
leucine-rich repeat 69..89 CDD:275380 3/19 (16%)
LRR_8 112..172 CDD:290566 14/60 (23%)
leucine-rich repeat 114..137 CDD:275378 4/22 (18%)
leucine-rich repeat 138..161 CDD:275378 5/23 (22%)
LRR_8 160..214 CDD:290566 12/59 (20%)
LRR_4 160..201 CDD:289563 11/46 (24%)
leucine-rich repeat 162..185 CDD:275378 8/27 (30%)
leucine-rich repeat 186..199 CDD:275378 1/13 (8%)
leucine-rich repeat 215..230 CDD:275378 4/14 (29%)
Ig 278..391 CDD:299845 31/113 (27%)
I-set 279..391 CDD:254352 31/112 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.