DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tip60 and mys-4

DIOPT Version :9

Sequence 1:NP_001259234.1 Gene:Tip60 / 31362 FlyBaseID:FBgn0026080 Length:541 Species:Drosophila melanogaster
Sequence 2:NP_492265.1 Gene:mys-4 / 183194 WormBaseID:WBGene00007914 Length:617 Species:Caenorhabditis elegans


Alignment Length:273 Identity:110/273 - (40%)
Similarity:161/273 - (58%) Gaps:15/273 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 KPWYFSPYPQELCQMPCIYICEFCLKYRKSRKCLERHLSKCNLRHPPGNEIYRKHTISFFEIDGR 335
            |..|.|.|.:.|.....:|.|:|||.....::.|..|...||.:||||.||||...::|||:||.
 Worm   346 KAIYSSAYEEPLHSSAHLYACKFCLHTTNLKEDLIVHWDICNAKHPPGTEIYRNDGLAFFEVDGA 410

  Fly   336 KNKVYAQNLCLLAKLFLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGYFSKEKESTEDYNVACILT 400
            ..|.|.|:|||::|||:..||||.:.:.|.|||:.|..:.|:.|||||||||..:::.|::|:|.
 Worm   411 VQKKYCQDLCLISKLFIASKTLYDEVETFKFYVLCEITTEGYVIVGYFSKEKNPSKNNNLSCLLV 475

  Fly   401 MPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYRSYWAQTILEIFISQNPSTDGEK 465
            :|..|:.|||:|||:.|||||:.|.:.|.||.||||||:|:||.||..::| .:|.::.:.|   
 Worm   476 LPMVQKMGYGRLLIDMSYELSRLEMRIGHPEHPLSDLGILAYRGYWRSSLL-CYIREHRNYD--- 536

  Fly   466 PTITINDICECTSIKKEDVISTLQNLNLINYYKGQYIVCINRVIIE----QHRRAMDKRKIRIDS 526
             .:.|.|:|..|.|...|:::.|...|:|....|.|.:.|.:..::    |.||..      :|.
 Worm   537 -RLNIKDMCLATRIAPVDIVNQLMLDNMIVLKGGVYSIKIGKRALKFPLSQCRRRF------VDP 594

  Fly   527 KCLHWTPKDWSKR 539
            ..|.|.||..::|
 Worm   595 SQLFWKPKPSAER 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tip60NP_001259234.1 Tudor-knot 23..78 CDD:288553
Drf_FH1 84..>157 CDD:283903
PHA01732 139..>196 CDD:222828
NAT_SF 254..533 CDD:302625 107/265 (40%)
MOZ_SAS 316..500 CDD:280097 83/183 (45%)
mys-4NP_492265.1 PLN00058 35..117 CDD:177689
PHD 92..144 CDD:214584
PHD 147..193 CDD:214584
NAT_SF 347..603 CDD:302625 107/266 (40%)
MOZ_SAS 391..565 CDD:280097 82/178 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5027
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D629545at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.780

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