DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brn and LOC448276

DIOPT Version :9

Sequence 1:NP_476901.1 Gene:brn / 31358 FlyBaseID:FBgn0000221 Length:325 Species:Drosophila melanogaster
Sequence 2:NP_001006126.1 Gene:LOC448276 / 448276 -ID:- Length:388 Species:Xenopus tropicalis


Alignment Length:295 Identity:78/295 - (26%)
Similarity:138/295 - (46%) Gaps:52/295 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 LRVPSFTAEVP--------------VDQPAR-------LTMLIKSAVGNSRRREAIRRTWGYEGR 106
            ||....|||:.              :::|.:       |.:||.........|||||:|||.|..
 Frog    94 LRQRVTTAEITSNRVSQNTLHYGYIINEPDKCQKSTPFLILLIAVEPQQLSAREAIRQTWGKEDL 158

  Fly   107 FSDVHLRRVFLLGT----AEDSEKDVAWESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNR 167
            |..:.:.::||||.    .:.:::.:..||.::.||:|.::.|.|.|.|:||::||.|.:.....
 Frog   159 FHGILIVKLFLLGRDSKGTDRTDQAIVDESNQYHDIIQQDYLDTYNNLTIKTLMGMHWIATFCPN 223

  Fly   168 SEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPELLFAGHVFQ-TSPLRHKFSKWYVSLEEYPFDRW 231
            ..:.:..|.|.:|:.::::..|.:...:.|.. .|.|:..: .:|.|:|.||||:..|.||.|.:
 Frog   224 VSYIMKTDSDMFVNTEHLIYRLLKPDAAPQTN-YFTGYFMKGYAPNRNKNSKWYMPPELYPGDLY 287

  Fly   232 PPYVTAGAFILSQKALRQLYAASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRP------- 289
            ||:.:...::.|.....::|..|:.:|....:|||:|:...|.||           :|       
 Frog   288 PPFCSGTGYVFSGDLAEKIYKVSLSIPRLHLEDVYIGVCLEKLGI-----------KPVPPPKES 341

  Fly   290 ------AYKGPDSYSSVIASHEFGDPEEMTRVWNE 318
                  .|.....|:.::.||:| .|.|:.:.||:
 Frog   342 YFNIWRVYYSDCVYNQIVTSHQF-QPSELLKYWNQ 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brnNP_476901.1 Galactosyl_T 92..282 CDD:250845 59/194 (30%)
LOC448276NP_001006126.1 Galactosyl_T 144..338 CDD:250845 60/205 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1037602at2759
OrthoFinder 1 1.000 - - FOG0000088
OrthoInspector 1 1.000 - - otm47879
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X41
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.