DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment brn and b3galt4

DIOPT Version :9

Sequence 1:	NP_476901.1	Gene:	brn / 31358	FlyBaseID:	FBgn0000221	Length:	325	Species:	Drosophila melanogaster
Sequence 2:	XP_002938731.1	Gene:	b3galt4 / 100489366	XenbaseID:	XB-GENE-919694	Length:	346	Species:	Xenopus tropicalis

Alignment Length:	349	Identity:	102/349 - (29%)
Similarity:	155/349 - (44%)	Gaps:	65/349 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly     5 HRKLLLR-------CLLVLPLILLVDYCGLLTHLHELNFERHFHYPLNDDTGSGSASSGLDKFAY 62
            ||..:.|       ||.:...||:|             |..|:...:         |..|..|..
Frog    10 HRLCIPRRTFSRFLCLSLFICILIV-------------FSEHYEEII---------SCALPLFYP 52

  Fly    63 LRVPSFTAEVPVDQPA-------------RLTMLIKSAVGNSRRREAIRRTWGYEGRFSDVHLRR 114
            .|.|..|  .|...||             .|.:|:.||..:..||.|||:|||..... |.....
Frog    53 TRSPPST--TPFKPPAILLSPPKACSPAPMLLILVSSAPFHHERRNAIRQTWGSSSNL-DSQAVT 114

  Fly   115 VFLLGTAEDSEKDVAW--ESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNRSEFYLFVDDD 177
            .|:||..:......|.  |::.||||:||.|.|:|.|.|:||::|:.|.|.:.:.:.|.|..|||
Frog   115 FFVLGVPQSHNDQAALLEEAKIHGDIIQAAFNDSYRNLTMKTLVGLSWMSQRCHGARFLLKTDDD 179

  Fly   178 YYVSAKNVLKFLGRGRQSHQPELLFAGHV-FQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFI 241
            .:|:..::.::|   :..|.|  |:.|.| ::..|.|...|:.|.|.:.||...:.||.:...:|
Frog   180 VFVNTFSLSRYL---QGQHGP--LYLGRVHWKVYPNRDPDSRHYTSTDIYPEKYFSPYCSGTGYI 239

  Fly   242 LSQKALRQLYAASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRPAYKGPDS---YSSVIAS 303
            ||.:.:..|...:...|:...:|||:|::|..||||.:|....   ..:.|.|.:   ||::.:|
Frog   240 LSHEVVEWLLQQTGKSPIIPLEDVYVGLLAWAAGISPKHSASM---SGSMKIPHNGCCYSTMFSS 301

  Fly   304 HEFGDPEEMTRVW---NECRSANY 324
            |.. .|:.|...|   :|.|  ||
Frog   302 HGL-TPKGMKEAWEILSEAR--NY 322

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
brn	NP_476901.1	Galactosyl_T	92..282	CDD:250845	66/192 (34%)
b3galt4	XP_002938731.1	Galactosyl_T	93..278	CDD:389837	65/190 (34%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1037602at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		otm72275
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X41
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.010