DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment brn and b3galt1

DIOPT Version :9

Sequence 1:	NP_476901.1	Gene:	brn / 31358	FlyBaseID:	FBgn0000221	Length:	325	Species:	Drosophila melanogaster
Sequence 2:	XP_004917762.1	Gene:	b3galt1 / 100488045	XenbaseID:	XB-GENE-988816	Length:	324	Species:	Xenopus tropicalis

Alignment Length:	267	Identity:	85/267 - (31%)
Similarity:	133/267 - (49%)	Gaps:	20/267 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    71 EVPVDQPAR-------LTMLIKSAVGNSRRREAIRRTWGYEGRFSDVHLRRVFLLGTAEDS--EK 126
            |..:::|.:       |.:||.:.......|:|||.|||.|..|..:.:..:||||...|.  .:
Frog    62 EFVINEPEKCGKDGPFLVILISTTHKEFDARQAIRETWGNESNFKGIKIVTLFLLGKNSDPVLNQ 126

  Fly   127 DVAWESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKN----VLK 187
            .|..||:...||:..:|.|:|.|.||||::||||.:...:::::.:..|.|.:|:..|    :||
Frog   127 MVEQESQIFHDIVVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYIMKTDSDIFVNMDNLIYKLLK 191

  Fly   188 FLGRGRQSHQPELLFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFILSQKALRQLYA 252
            ...:.|:.:     |.|:|....|:|...||||:..:.||...:||:.:...:|.|......:|.
Frog   192 PTTKPRRRY-----FTGYVINGGPIRDVRSKWYMPRDLYPESNYPPFCSGTGYIFSADVAELIYK 251

  Fly   253 ASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRPAYKGPDSYSSVIASHEFGDPEEMTRVWN 317
            .|:|..|...:|||:|:...|.||.......|...:.|| ....|..||..|:.| ||||.|:||
Frog   252 TSLHTRLLHLEDVYVGLCLRKLGIHPFQNSGFNHWKMAY-SLCRYRRVITVHQIG-PEEMHRIWN 314

  Fly   318 ECRSANY 324
            :..|..:
Frog   315 DMSSKKH 321

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
brn	NP_476901.1	Galactosyl_T	92..282	CDD:250845	64/195 (33%)
b3galt1	XP_004917762.1	Galactosyl_T	90..277	CDD:250845	64/191 (34%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1037602at2759
OrthoFinder	1	1.000	-	-		FOG0000088
OrthoInspector	1	1.000	-	-		otm72275
Panther	1	1.100	-	-	O	PTHR11214
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X41
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	6.020