DRSC/TRiP Functional Genomics Resources

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Protein Alignment brn and tpo

DIOPT Version :9

Sequence 1:NP_476901.1 Gene:brn / 31358 FlyBaseID:FBgn0000221 Length:325 Species:Drosophila melanogaster
Sequence 2:XP_031758614.1 Gene:tpo / 100036738 XenbaseID:XB-GENE-920152 Length:872 Species:Xenopus tropicalis


Alignment Length:161 Identity:33/161 - (20%)
Similarity:49/161 - (30%) Gaps:76/161 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 EGRFSDV-HLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNNTLKTMLGMRWASDQFNR 167
            |||.::| .|..|..|           | .|||..|.:|          || .|...|.|     
 Frog   339 EGRANEVITLAAVHTL-----------W-LREHNRIAKA----------LK-KLNPHWNS----- 375

  Fly   168 SEFYLFVDDDYYVSAKNVL--------------KFLGRG------------RQSHQPELLFAGHV 206
                    :..|..|:.::              |.||:.            .|...|.:   .::
 Frog   376 --------ETTYQEARKIVGALHQIITFRDYMPKILGKAAYDQYIGLYKGYNQKTNPSI---SNI 429

  Fly   207 FQTS----------PLRHKFSKWYVSLEEYP 227
            |.|:          |:.|:.:..||...:||
 Frog   430 FTTAAFRFGHATIPPMVHRLNSQYVDDPKYP 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brnNP_476901.1 Galactosyl_T 92..282 CDD:250845 33/161 (20%)
tpoXP_031758614.1 thyroid_peroxidase 116..679 CDD:188657 33/161 (20%)
CCP 687..736 CDD:153056
EGF_CA 738..781 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165174870
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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