DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lva and cenpe

DIOPT Version :9

Sequence 1:NP_001284849.1 Gene:lva / 31350 FlyBaseID:FBgn0029688 Length:2779 Species:Drosophila melanogaster
Sequence 2:NP_001314688.1 Gene:cenpe / 767754 ZFINID:ZDB-GENE-060929-860 Length:2690 Species:Danio rerio


Alignment Length:2988 Identity:622/2988 - (20%)
Similarity:1196/2988 - (40%) Gaps:819/2988 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 KERALRKSQDERHKSSMSDSMESLKTLGQKLTVLKTRSGDSSTPLVSPTKDSDPGDVSLLQTSGS 140
            ||..||.|..|.:..:::|    |.....|...|:.|.|:.....|:...:.       |.||..
Zfish   128 KEFLLRVSYMEIYNETVTD----LLCDSWKRKPLEIREGNYKNVYVADLTEE-------LVTSPE 181

  Fly   141 EKLLMLTQ--------RTEQN----------RALLEQRKRD-----------LAKSLLSVKSNIG 176
            :.|..:|:        :|:.|          |.:||.|:|.           :..|.|::....|
Zfish   182 QALSWITKGEKNRHYGKTKMNQRSSRSHTIFRMILESRERSDPTAGESADGAIIVSHLNLVDLAG 246

  Fly   177 HQTTAELGSSMTDLRHAASVSNPPVSRHRSALDLEAQGQEAVDESRVKLLRSR-MKLTELKQGRQ 240
            .:..::.|:.....:...::       :||...|....::..|||:...|..| .|||.:     
Zfish   247 AERASQTGAEGARFKEGCNI-------NRSLFTLGQVIKKLSDESQKGFLNYRDSKLTRI----- 299

  Fly   241 EQELNELRTELAKRAKLIERLELSGAELQRTLT----------QRNEELEQLRVVQAEEDSLKVQ 295
                  |:..|...||.:....::.|.:..|::          .:|:.    .|.:..::...::
Zfish   300 ------LQNSLGGNAKTVIICTITPATVDETVSTLQFASAAKRMKNDP----HVTEVSDEGALLR 354

  Fly   296 ENSRLQGEVLVLRERLAELENVNDLLETTRCELQEELTTARERQRNLELEQEQEKASRSPQSEAA 360
               |.:.|::.|:.||.|:.:|..             |||.||:...:|.||:::..|..:    
Zfish   355 ---RYRNEIVDLKRRLQEVSSVTQ-------------TTATERESLCQLLQEKDQLQREQE---- 399

  Fly   361 HTDAQVSAELAKQLQELTNQLADLQATNEELRQQVAAQAKLQVTDEIVSQRLEELEATIAAQLLE 425
                    :..|.|.:|....:::....:..:::|....||..:..::::.|...:.:.|...|:
Zfish   400 --------DRIKNLTKLLVTSSNIALIPKVPKRRVTWGGKLLRSAHLLNEDLCSTDMSFAEPYLK 456

  Fly   426 LQEQKSAMAAQNEELAE-----KTTELNVLNVNLRLLEEKLAQSSRSKPLFLEDHSEDSAASKQM 485
            .:....::|...|::.|     ..|.:...|:::.:....:..||..      .|..||..:.::
Zfish   457 KRRADCSLADVGEDMDEFDSRFDFTAMEEPNMDMEMSSITVRSSSEG------SHFLDSPRASEL 515

  Fly   486 QEDLQQLKLKLD---------ETNKANIKLKLKCKQAEKKLQKFQSQDGQQQLASLLADNEELQQ 541
            .:.:..|:.:|:         |...|.:::||...|...:.|...|.:.:..::.|....|:||:
Zfish   516 MQKVSSLESQLEAETQSKQIAEEMNAELQMKLSHLQNMLEAQSAPSHEEKNTISELEKQMEDLQR 580

  Fly   542 RIAVLEDEKGQWQLANMQEDDRQPEQSTESNNPLQLETIRLLEEQKLELQQALEALLSSSSSAES 606
            |   ||.|        :||.....|:|..            ||.:..||::..|.||.|.::.|.
Zfish   581 R---LETE--------VQERQTAEEKSIS------------LELKVAELEKPSEELLHSQNTCER 622

  Fly   607 I--EIVERHHLECLGQRRPASEGDA--QEQKQVHPPGPSHVSELTQTEQTE----EEDS---SGE 660
            :  ::.|...| |   ...:.|.||  .|:..:     .|..::| ||:.|    |:||   ..:
Zfish   623 VKKDLEEAIQL-C---ETVSFEKDAVIAERDMI-----KHSLDMT-TEELESLKAEKDSLQKEKD 677

  Fly   661 TLSQLRERLELFTQER--GEVLDKLE---------QLSAENLQLQARLEESSSSLQLL------- 707
            .|.:.::.|:...:||  .:..:|||         :|.|||.:|:..|::|...:|.|       
Zfish   678 ALQKDKDALQKDMEERRDADEFEKLEEESKRDYERELEAENSRLEKNLKQSEDMIQKLKADLALM 742

  Fly   708 --QREREKDLISSTS--TSSNLSQELSSMQRSSEVVATLDAGEGGPVLFEKCEKSLSKLNSELEA 768
              :.:::.||.:...  :..::.||::.::||.:...||..         :.:|..:.|.||..:
Zfish   743 SSELQKKTDLTTELQGFSGKDIVQEVTRLRRSLDDAETLSL---------ETKKEWAFLRSENIS 798

  Fly   769 YRKANDRQAKFNVS-KKLAKEAKNCHTQLSELLHKVKEASTAV--ETVTVVETVVAVTA-PNGKA 829
            .:   :|....... .|:..|.|....:|.:...:.|:..|.:  |.:...:....:|| .:||.
Zfish   799 LK---ERDVTLTTDYGKMEAEVKMLQDRLEQEKSRFKKMQTDLQKELMGAFDENTKLTALMDGKV 860

  Fly   830 LAEYEQLNAQNAELKAVISRLRQELDELRESYPETEAPLAIVGSDSQREDEIL-QLQSQLEDARS 893
            ....    ..|..|:..:..||:|||::||.....::.::.:.:...:.||:| |:....|:.||
Zfish   861 PKNL----TDNVVLEKTVCDLRKELDQIREREQSLQSKVSELETLPAKVDELLGQVCVVSEELRS 921

  Fly   894 LQAEQRQQIEEQVDQIKELRQTEAE-----QLQLVARQSAEITQLQLQSEQFDQ-LLNSKEMSHE 952
            :: |:|..:......:.|..|...|     |.||:..:| ::.:.||:..|..| |.::.:..|.
Zfish   922 VR-EERDAVCSAQASVNEAHQRLTEDYSTAQHQLLQMES-DLLEAQLKETQLSQELSDNTQQLHN 984

  Fly   953 KQLEQQTRIRRELEAR---------------------AESLEGELSILQTL------VAEQKQQ- 989
            .|.|..|.:....||:                     :|.:|||...||:|      :.|:||| 
Zfish   985 MQTENDTLLTSLQEAQQKCEQLSADLASVCAERDLLLSEKMEGESEELQSLRNTISSITEEKQQM 1049

  Fly   990 --LIESVSESEHAL------NLKML-----ELQSAQEELRELR--------AKEDPDQLREALRV 1033
              :::|:.|....|      |::|:     ||:.|||:::||:        .:.:||:.||    
Zfish  1050 QEILQSLREQRDQLKTDLEENVEMMIETQAELRDAQEKVKELQGEINRLESGRVEPDEQRE---- 1110

  Fly  1034 SKSLVAQQVRELTSSQETVDALNQQIQEYQGLEHAHKEEQFKNRELREKLKKYALNLKKRTQDNA 1098
                           ...:|.|:|||                 ::|.|:|:...:..::...|.:
Zfish  1111 ---------------DGQMDTLHQQI-----------------KQLTEELQATVVEKERLLSDRS 1143

  Fly  1099 DLEQKVQ-ELTSQLQEQQELVKQKEEVEREPIVDNHRVEQLQQQVSKLNEDLKAKIH---LNLEN 1159
            :|.:|:. ::||..:::.||.::.:::||:.......:|:.:|.:.:|..:|:.|..   |:.:.
Zfish  1144 ELMEKMNTDVTSFTEQRSELQERLQQLERDSDTMKTHLEEKEQTILQLQSELQEKQQQQILDQDQ 1208

  Fly  1160 RDALRQLKQQIQEQEQLIQERDAELQDANLVSKELRRERQEADQEVFQLGQENSRLREE---ISK 1221
            :|...:...::|:.:.|.:|.:|.|:..|.::..|    :|:.|:|..:.:|...:|||   :..
Zfish  1209 QDFSEEKTDELQQIQTLKEELEAVLEQKNQLTLRL----EESAQQVCVVSEELRSVREERDAVCS 1269

  Fly  1222 LQEEIHNLGQRVN-EEPTAVEDLRRQ----LEAKSKKFEKSKELIKLRNATIQSLQRELQQLQQD 1281
            .|..:....||:. :..||...|.:.    |||:.|:.:.|:||        ....::|..:|.:
Zfish  1270 AQASVSEAHQRLTVDYSTAQHQLLQMESDLLEAQLKETQLSQEL--------SDNTQQLHNMQTE 1326

  Fly  1282 QDSEVEHVRNARAAHEQLRLEKDAEITALRQEILKLERSRAAGEGDDTITKTSHQLLESQSQQQA 1346
            .|:.:..::..:...||  |..|.......:::|..|:.....|...::..|...:.| :.||..
Zfish  1327 NDTLLTSLQETQQKCEQ--LSADLASVCAERDLLLSEKMEGESEELQSLRNTISSITE-EKQQMQ 1388

  Fly  1347 ESLQVAERELQQLRVQLTAAQEQHALLAQQYASDKANFEMTIARLETLHEGIQAKLQEDASYIES 1411
            |.||....:..||:..|   ::.:.:|.|      |..|....:::|.|:.:   ||:.....|.
Zfish  1389 EILQSLREQRDQLKADL---EDSNGMLMQ------AQLEHGGPQIDTPHDEL---LQQIQQLREE 1441

  Fly  1412 LEAQNTELQARSAALEEQAASQANQQ---AASQDKVQILEQQLKE-QREQEEQKRQQDQQLQERF 1472
            |:|.|.|.....:.|:|........|   .|:.|||:.|::.|:| |.:|:|.|.:.        
Zfish  1442 LDATNEEKNQLKSDLQENVEMTIENQEELRAALDKVKDLQKSLEELQTKQQESKHKS-------- 1498

  Fly  1473 YELGQREQAQSRQLELLTSEAEESRQQLAGLRTEYESLLAKHSQLTAT-AQAEREQMSSHSQEE- 1535
                        ||||   :.::.|::|..:|.|.|.||::||..|.| |:..:..::|.::|: 
Zfish  1499 ------------QLEL---QMQQLREELESVRHERERLLSEHSPNTHTDAEQMKADITSLTEEQE 1548

  Fly  1536 -----LAELRQQLDVKEADLHRQRQVYDAKLAAKATELDELECDLNSHVERAAAETRELCQQLER 1595
                 |.|||.||                 :..:.|.| :|..||.|           :|.:.||
Zfish  1549 QLQRTLQELRDQL-----------------MQTEQTVL-QLRADLES-----------VCAERER 1584

  Fly  1596 SQELVAQRTEELQRLNEEFQEVERERSTLSREVTLLRLQHDSAEQDVLELQELRMQAMQDKTEMD 1660
               |:..|:.:::.:.:....:..||..|.:.|..|..|.:...:|:.|.|::.:|         
Zfish  1585 ---LLMDRSRDVEEMEKMSCRLTEERDALQQTVQQLSDQSEQLRRDLEENQDMVLQ--------- 1637

  Fly  1661 NLRTQIDALCANHSQELQALQQRIAELDTLGQNQTDDQVYIETENKRLAEQLSELQAQLARQQHQ 1725
             ||..:.::||...   :.|.::.::::.|              :.||.|:...||     |..|
Zfish  1638 -LRADLQSVCAERE---RLLTEKSSDMENL--------------SCRLTEERDALQ-----QTVQ 1679

  Fly  1726 QQQQQHHHPAVQSQQHPPPASLFFGGDALAAPSPFDEIAQPLRVSSLAASAPPPISPPPTIEDLQ 1790
            |.:.|.                                                       |.|:
Zfish  1680 QLKDQS-------------------------------------------------------EQLR 1689

  Fly  1791 RNVSDLEKHAQDLETKLLARNQNLAEQEERRLQLEQRLSEVERLLSERTQQLADIQTANEERDRL 1855
            |   |||:: ||:..:|             |..:|...:|.||||:||.|.||.|   .:||::|
Zfish  1690 R---DLEEN-QDMVLQL-------------RADVESGCAERERLLTERDQDLASI---TKEREQL 1734

  Fly  1856 AALEKLIQPAAAPTLDMFFGGQAE--------ETVPDAVSH---HLDLGLPQTEPVVEPLIQPKK 1909
                          ||:....:.|        |...:.:.|   .|:....:.:.:|..:.:.:|
Zfish  1735 --------------LDLLKANREEKNQLRTDLEENQENLLHLRQELESVSAEKDHLVSEMSREQK 1785

  Fly  1910 AYLCQPKQEIQEQTAQTIDWGVDEDPWASAANEAPQTDVEHLHTRIAQLELQLSNAEQQKTELQT 1974
            .:|.:.|...::.:|.|::           .::..:::.||..| |.||...|.:|..::..|..
Zfish  1786 EHLEEMKTTEEKLSAVTVE-----------RDQLMESNTEHNQT-IVQLRADLQSACAERDSLMV 1838

  Fly  1975 KAAKLMKRLKEYKTKATTTATPTVTVDNDLDSTI--IEEL-KHQLQLQESRLSKAEEISQQHALE 2036
            :             :..:::...::...||...:  :.|| :.|.:|::.:...::.:|..|. :
Zfish  1839 E-------------RDQSSSCSALSDGGDLQEILQGVRELIQVQGELKQKKHQHSDPLSPTHK-Q 1889

  Fly  2037 KEKLAKRIDVLTA-----GNDRMAEMKERQDMDV--QMYQARIRELQEKLSQLDQWGEPAATVSS 2094
            |.:| :::..||.     .|:||...|:.:|...  :|||..:...:|:|.|..:       .::
Zfish  1890 KAQL-QQLQSLTTEMESLRNERMVLRKDLEDAAATSKMYQELLHVSKEELKQQQK-------ENT 1946

  Fly  2095 SLDGDEAARIESLQQEIQQLRQQVSELEDERTRDQAELGALRQSSQGYDEAEDNQKLELQQLRQQ 2159
            .|....:||...|||::.:|.:.::.|:..|.:...|:                |:|: .:||..
Zfish  1947 ELMEQSSARETQLQQQLNELNEDLTALKVLRDQHDTEI----------------QRLQ-SELRSL 1994

  Fly  2160 ESELEALRTRDQSELEALRQSCQGHDETVRIATLQQDNQQLELQQLRQAIIELETLRARDQTELE 2224
            ..|.|.|..:.::|.|.||:..|         |||...::...:||.|::.|     .|||    
Zfish  1995 SREKEDLLEKSRAEGELLRRDLQ---------TLQDQLEKSPTEQLLQSLTE-----ERDQ---- 2041

  Fly  2225 ALRQSSQGHDEAARIAIEQRDNQQLELQQLRQQLIELEALRARDQAELEALRQSCQGQQLSVDMA 2289
             ||:..||       .:|:..:.:.:.:||.:|.|.||       :|:.:|.||......||...
Zfish  2042 -LRRELQG-------KMEKLTHIETKAEQLEKQKILLE-------SEVHSLSQSLSEVNCSVSPD 2091

  Fly  2290 SRNDEQ----MAQLQEKESEIVHLKQRIEELM-----------RED------------------- 2320
            ..|.:.    ||.::..|.::.....:::::|           ||:                   
Zfish  2092 QNNTQSKHLIMAGIETSEEKLQTAFTKLQQIMERPVDQLSDVNREEWAVLYQLVPFIPKERRTIN 2156

  Fly  2321 -----QTEKLVFEILTKNQELQLLRMQV-----KQLEED----KEDQQ------VSAAPP----- 2360
                 :|.:|...|:...:..|.|..:.     .:|:.|    :|.:.      :|.||.     
Zfish  2157 ATHTKKTTRLNHAIIKIAEAYQRLAHRFHTHFQTELQRDVCCFQESRLQDLLLCISPAPSQSLCS 2221

  Fly  2361 -KDDGETV--EKLKSLCQQLQQEKSDMEEELRVLNNHVLSSLEL--EDRMKQT-LLQLDTKNIEI 2419
             :||.:.:  ::|..|.::.||....:|..|.||...:....|:  |:|..:| .||      |:
Zfish  2222 LQDDFQQLWEQRLSHLLEKRQQYLQKLECVLVVLEEGLSRYAEMLSEERQHRTEELQ------EL 2280

  Fly  2420 TELRRS------LEILQSQNLGQNSAAE---------------QIPDLSAINQQWEQLVEQKCGE 2463
            ..|.||      :|:|:.|...::.|||               :|..|.:.:.:.|:.:|.:..:
Zfish  2281 KTLLRSAHADAVIELLERQISRRDKAAERLNTYYFVLLNKCDSEINPLKSSSSESERRLEDQRRQ 2345

  Fly  2464 VASIWQ-----------------EHLSQREAAFKAQLEEVTQQQQRELPQSQQSTQGEATSDIMQ 2511
            ..::.:                 :||||:.......:||: |:|.:||     ..|.:|::   |
Zfish  2346 TLTLLKAQNGTLPKTEAELLQDNQHLSQQLQQAHRHVEEI-QEQMKEL-----QVQADASN---Q 2401

  Fly  2512 KMQKALETQEMEIVTLKEQLAIRSAEYARLAAQYDPFRLQNRGGASGGNPASTTVSAGGPPSLTA 2576
            |..:.|  ||:.:..:::|..::|.|        |..|.......|...||::.::|        
Zfish  2402 KQHEDL--QELRVQLMEKQNLVQSLE--------DKLRHSEALVKSSMTPAASELAA-------- 2448

  Fly  2577 NEPLPEYVLKADLDY-ALMMLHQRDMRVEEMIVELVQLLEERDHLQLKLSDTLR--QLETERSRV 2638
               |.:.::|.:|:: |:...|:::      |.::..:||.|..:..||.:|||  |.:.|:|..
Zfish  2449 ---LKDKLVKMELEHIAVTTSHEKE------ISQMSSMLEHRGDVIRKLKETLRKQQQDDEQSFT 2504

  Fly  2639 -SDEPSATASSSAASSSSPSKISSAGSNSELLGTTSAAGSDLKQKLAELQTVKHSKDKVIVDERE 2702
             .||.....||.|.::....|:                 .||::|.|:.:::. ||.:..:.:.:
Zfish  2505 DGDEFELKTSSRATTTLKEKKM-----------------EDLQKKNAQFESLV-SKQQEEISKWK 2551

  Fly  2703 QRLQQMLQLQKDMAKQGSGSQSGAGAVAAVAAPTS----AAPTAIGVDLSQSGLRSPSMMLMD 2761
            :|..:|.:.::|                |...||.    ..||.....|:::.:.||...::|
Zfish  2552 RRAYKMKESKRD----------------APCTPTKRDAPRTPTKRHPALAETEVNSPKRSVLD 2598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lvaNP_001284849.1 SMC_prok_B 327..1151 CDD:274008 197/931 (21%)
SMC_prok_B 952..1721 CDD:274008 186/840 (22%)
SMC_prok_B 1475..>2183 CDD:274008 150/735 (20%)
cenpeNP_001314688.1 KISc 6..343 CDD:214526 47/247 (19%)
KISc_CENP_E 6..337 CDD:276825 46/237 (19%)
Myosin_tail_1 801..1826 CDD:279860 276/1281 (22%)
CASP_C 984..>1100 CDD:285395 28/115 (24%)
DUF342 <1430..1517 CDD:302792 28/112 (25%)
SMC_prok_B 1468..2193 CDD:274008 201/984 (20%)
GluZincin 1935..>2053 CDD:301352 40/167 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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