DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lva and Golgb1

DIOPT Version :9

Sequence 1:NP_001284849.1 Gene:lva / 31350 FlyBaseID:FBgn0029688 Length:2779 Species:Drosophila melanogaster
Sequence 2:XP_006248441.1 Gene:Golgb1 / 192243 RGDID:708429 Length:3228 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lvaNP_001284849.1 SMC_prok_B 327..1151 CDD:274008
SMC_prok_B 952..1721 CDD:274008
SMC_prok_B 1475..>2183 CDD:274008
Golgb1XP_006248441.1 alaS <45..114 CDD:234701
PRK12704 63..>181 CDD:237177
SMC_prok_B 189..>947 CDD:274008
SMC_prok_B 720..1623 CDD:274008
Smc 1339..2169 CDD:224117
SMC_prok_B 1876..2632 CDD:274008
Smc 2258..3046 CDD:224117
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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