DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vap33 and vapa

DIOPT Version :9

Sequence 1:NP_570087.1 Gene:Vap33 / 31349 FlyBaseID:FBgn0029687 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_001011333.1 Gene:vapa / 496796 XenbaseID:XB-GENE-990155 Length:227 Species:Xenopus tropicalis


Alignment Length:262 Identity:97/262 - (37%)
Similarity:138/262 - (52%) Gaps:44/262 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTAPKRYCVRPNIGKIIPFRSTQVEIC 74
            |.::|.:||:|.||||..|.|.:.|||.|...:.||:|||||:|||||||.|.|.|..:..|.:.
 Frog     8 LILDPPNELKFKGPFTDVVTTNLKLRNPSDKKVCFKVKTTAPRRYCVRPNSGTIDPGSTVTVSVM 72

  Fly    75 LQPFVYDQQEKNKHKFMVQSVLAPMDADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANA--E 137
            ||||.||..||:|||||||::.||  ..:||:..:||:.:|:.|||:||:|||:||..:...  |
 Frog    73 LQPFDYDPNEKSKHKFMVQTIFAP--PTISDMEAVWKEAKPDDLMDSKLRCVFDMPHEQEKPTHE 135

  Fly   138 NTSGGGAVGGGTGAAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEIKA 202
            :|.....:.|..|:                        ||.|..:...|:|          |.|.
 Frog   136 STKLYSCLPGTKGS------------------------SSMDDTETRKLME----------ECKR 166

  Fly   203 LRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFYIAVAIAAAIVSLLLGKF 267
            |:...|:|..||..||::..|.|      :.::....:|.::.||:..:.|.|||..:...||||
 Frog   167 LQSEMIKLSDENQVLKEETLRMR------KASDKSGKMLRDQGIPIPSLVVVIAAIFIGFFLGKF 225

  Fly   268 FL 269
            .|
 Frog   226 IL 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vap33NP_570087.1 Motile_Sperm 9..115 CDD:279029 54/104 (52%)
vapaNP_001011333.1 Motile_Sperm 7..111 CDD:279029 54/104 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 114 1.000 Domainoid score I6012
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I4207
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1332028at2759
OrthoFinder 1 1.000 - - FOG0000705
OrthoInspector 1 1.000 - - otm47639
Panther 1 1.100 - - LDO PTHR10809
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2279
SonicParanoid 1 1.000 - - X526
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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