DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vap33 and hpo-28

DIOPT Version :9

Sequence 1:NP_570087.1 Gene:Vap33 / 31349 FlyBaseID:FBgn0029687 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_498232.3 Gene:hpo-28 / 175798 WormBaseID:WBGene00015148 Length:567 Species:Caenorhabditis elegans


Alignment Length:260 Identity:53/260 - (20%)
Similarity:97/260 - (37%) Gaps:80/260 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LTIEPEHELRFV---GPFTRPVVTIMTLRNNSA-LPLVFKIKTTAPKRYCVRPNIGKIIPFRSTQ 70
            ::|.|..|||..   |  ...::.::.::|.|: .|::||.|||:|:::.|||:.|.:.|..:..
 Worm   356 VSITPRDELRLEKLDG--ENDLLDVVLVKNQSSDTPIMFKFKTTSPEKFRVRPSSGIVQPGTTEI 418

  Fly    71 VEICLQPFVYDQQEK-NKHKFMVQSVLAPMDADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEA 134
            :.:.||   |:.:.. ||.||:    |..|::..:|:...     .||...|..|..|:...   
 Worm   419 IRVYLQ---YEYRHSWNKEKFL----LLTMESSSTDVESF-----SEQFKSASNKAEFKFKC--- 468

  Fly   135 NAENTSGGGAVGGGTGAAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGE 199
                                             .|....||...::.:.|.||:..:.|....| 
 Worm   469 ---------------------------------RLSENLKLDQPEERRSSFLLQQQQLLSKPEG- 499

  Fly   200 IKALRECNI---------------------ELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAE 243
             .:|...||                     ::|.:|..|::.:....|.  :|:.:.|....:.|
 Worm   500 -FSLGGFNIYLPIITLILFLFLIFQFSYILQMRSDNALLRETLVSLSSQ--IKEASVPLQETIVE 561

  Fly   244  243
             Worm   562  561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vap33NP_570087.1 Motile_Sperm 9..115 CDD:279029 30/109 (28%)
hpo-28NP_498232.3 SEC14 105..247 CDD:238099
Motile_Sperm <381..460 CDD:279029 27/90 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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