DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vap33 and hpo-28

DIOPT Version :10

Sequence 1:NP_570087.1 Gene:Vap33 / 31349 FlyBaseID:FBgn0029687 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_498232.3 Gene:hpo-28 / 175798 WormBaseID:WBGene00015148 Length:567 Species:Caenorhabditis elegans


Alignment Length:260 Identity:53/260 - (20%)
Similarity:97/260 - (37%) Gaps:80/260 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LTIEPEHELRFV---GPFTRPVVTIMTLRNNSA-LPLVFKIKTTAPKRYCVRPNIGKIIPFRSTQ 70
            ::|.|..|||..   |  ...::.::.::|.|: .|::||.|||:|:::.|||:.|.:.|..:..
 Worm   356 VSITPRDELRLEKLDG--ENDLLDVVLVKNQSSDTPIMFKFKTTSPEKFRVRPSSGIVQPGTTEI 418

  Fly    71 VEICLQPFVYDQQEK-NKHKFMVQSVLAPMDADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEA 134
            :.:.||   |:.:.. ||.||:    |..|::..:|:...     .||...|..|..|:...   
 Worm   419 IRVYLQ---YEYRHSWNKEKFL----LLTMESSSTDVESF-----SEQFKSASNKAEFKFKC--- 468

  Fly   135 NAENTSGGGAVGGGTGAAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGE 199
                                             .|....||...::.:.|.||:..:.|....| 
 Worm   469 ---------------------------------RLSENLKLDQPEERRSSFLLQQQQLLSKPEG- 499

  Fly   200 IKALRECNI---------------------ELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAE 243
             .:|...||                     ::|.:|..|::.:....|.  :|:.:.|....:.|
 Worm   500 -FSLGGFNIYLPIITLILFLFLIFQFSYILQMRSDNALLRETLVSLSSQ--IKEASVPLQETIVE 561

  Fly   244  243
             Worm   562  561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vap33NP_570087.1 Motile_Sperm 9..115 CDD:459882 30/109 (28%)
hpo-28NP_498232.3 CRAL_TRIO 107..246 CDD:459890
Motile_Sperm 356..460 CDD:459882 33/117 (28%)
Blue background indicates that the domain is not in the aligned region.

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