DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42541 and Rrad

DIOPT Version :10

Sequence 1:NP_996345.3 Gene:CG42541 / 31344 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:NP_445790.2 Gene:Rrad / 83521 RGDID:69357 Length:307 Species:Rattus norvegicus


Alignment Length:216 Identity:70/216 - (32%)
Similarity:98/216 - (45%) Gaps:35/216 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   973 SVTSTGTSNSG--VD----RHNSNASGASGEVIDGDPNVPAYKIAMLGASGVGKTTLTYQFTTSD 1031
            :.|:.||...|  :|    ..:|.:||.||.. ||     .||:.:|||.||||:.|...|.   
  Rat    56 AATAAGTRTQGQRLDWPEGSSDSLSSGDSGSE-DG-----VYKVLLLGAPGVGKSALARIFG--- 111

  Fly  1032 YICAYDLSLDDDYGQKTV------SVLVDNIETDLEIID----HPACEMSTEAFCATYNIDLFVV 1086
                   .::|....:..      |:.||..|..|.:.|    ...|.:  ...|.... |.:|:
  Rat   112 -------GIEDGPEAEAAGHTYDRSITVDGEEASLMVYDIWEQDGGCWL--PGHCMAMG-DAYVI 166

  Fly  1087 VYSVIDRNTFAAAERVLQYLKENEMLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIET 1151
            |||:.|:.:|..|..:...|:......:...|||.||:||.|.|.|:...||..|....||||||
  Rat   167 VYSITDKGSFEKASELRVQLRRARQTDNVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 231

  Fly  1152 SSGLDHNVDELLVGIVAQVKL 1172
            |:.|.|||..|..|:|.|::|
  Rat   232 SAALHHNVQALFEGVVRQIRL 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 Amelogenin <477..>550 CDD:197891
RGK 1008..>1175 CDD:206715 58/175 (33%)
RradNP_445790.2 RGK 91..307 CDD:206715 58/175 (33%)
Blue background indicates that the domain is not in the aligned region.

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