DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42541 and rem2

DIOPT Version :10

Sequence 1:NP_996345.3 Gene:CG42541 / 31344 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:NP_001116518.1 Gene:rem2 / 798285 ZFINID:ZDB-GENE-081110-1 Length:306 Species:Danio rerio


Alignment Length:246 Identity:61/246 - (24%)
Similarity:104/246 - (42%) Gaps:67/246 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1009 KIAMLGASGVGKTTLTYQFTTSDYICAYDLS------------LDDDYGQKTVSVLVDNIETDLE 1061
            :|.:||.:||||::|.        :|...||            .|:.|.::   |.||:.::.:.
Zfish    76 RIVLLGQNGVGKSSLA--------LCLAGLSDRSLSIDSETQAADEGYPRR---VTVDDEDSSIL 129

  Fly  1062 IIDHPACEMSTEAFCATYNIDLFVVVYSVIDRNTFAAAERVLQYLKENEMLLSRGAILVANKTDL 1126
            :.|:...|:|      |...::.::|:|:.||.:|....::...|:|:  |.....|||.||:||
Zfish   130 VYDNWKQELS------TLQCEVCILVFSLTDRRSFHRIAQLRLLLRES--LPHTPIILVGNKSDL 186

  Fly  1127 QRHRVVTRQMGRKVAKEIACKFIETSSGLDHNVDELLVGIVAQVK-------------------- 1171
            .|.|.::.:.....|....|.::|.|..|||..::||...|...:                    
Zfish   187 VRSREISTEEAHSSAMMFGCLYLELSVSLDHRTNDLLEAAVRAARGHSLGPGWTEGSPSAARRES 251

  Fly  1172 LNPQRLRLLTELELQRLNL----------QSTIQKHRGMHLQTRRMVRQMS 1212
            |..:..|.|:.| :.|.:|          ...:.:|||     .||:||.|
Zfish   252 LTSRAKRFLSGL-VPRSHLGRERDREPGRDRDLSRHRG-----SRMLRQKS 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 Amelogenin <477..>550 CDD:197891
RGK 1008..>1175 CDD:206715 48/197 (24%)
rem2NP_001116518.1 P-loop containing Nucleoside Triphosphate Hydrolases 75..305 CDD:476819 61/246 (25%)
Blue background indicates that the domain is not in the aligned region.

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