DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42541 and Rgk3

DIOPT Version :10

Sequence 1:NP_996345.3 Gene:CG42541 / 31344 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:NP_001286670.1 Gene:Rgk3 / 5740446 FlyBaseID:FBgn0085426 Length:486 Species:Drosophila melanogaster


Alignment Length:518 Identity:149/518 - (28%)
Similarity:220/518 - (42%) Gaps:129/518 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   753 VSPQYGTV--GSLNSQVPATGEAGKPGIVGSDGIGGGG---GGLPGGSSHNLNLTVGLGFLGGSS 812
            :||.:..:  .:.::.:.|||.:.:..|.|..|..|..   ||.|             |:.....
  Fly     5 ISPMHHRMQKKTRSASICATGASIETVIHGMPGASGSATPEGGTP-------------GYRRRRP 56

  Fly   813 TTLAAVAEVTSGPDGNGDSTDSPSPVSMIPSNQQKQQQQLLQLQLQQEQQHLPTHLPMKRERGVG 877
            .|.:..|.:|||                ..|.:||.:.|    |.||:|||.           :.
  Fly    57 ATRSQSARITSG----------------ARSVRQKTKAQ----QQQQQQQHT-----------LQ 90

  Fly   878 ESSGASTSGTAIAELASSVVLATQSGKPMTERQRLRTSSMPAESRRPRLAEMRRS---------- 932
            |:....||...::|..             |..||.:.|     .|||:....|:|          
  Fly    91 ETRSYCTSEPRLSETE-------------TPPQRRKLS-----QRRPQTHAHRKSNAFLDVPTMN 137

  Fly   933 --AIHAGDPDMTYYRLRSFSITSHGICNLGDSLRSRRSRSINSVTSTGTSNSGVDRHNSNASGAS 995
              .:...|.|....|||:||.:..||.|.|||.|.||||| ||:..:.      ..|..|..|..
  Fly   138 MHHLRVNDDDEDVDRLRTFSASKGGIINRGDSFRRRRSRS-NSLAPSS------PMHTRNGVGGL 195

  Fly   996 GEVIDGDPN---------------------------VPAYKIAMLGASGVGKTTLTYQFTTSDYI 1033
            |.|..|..:                           |..|::.|||::||||..|..||.|||.|
  Fly   196 GGVAGGGSSLGLGCGYNGGSSSNGFGNANAQENHQPVEFYRVEMLGSAGVGKQALLSQFRTSDCI 260

  Fly  1034 CAYDLSLDDDYGQKTVSVLVDNIETDLEII-DHPACEMSTEAFCATYNIDLFVVVYSVIDRNTFA 1097
            .|||....|| .::.||::::..|::|:.: .:|..:...|      ..|.|:||||.||:.:|.
  Fly   261 NAYDGPECDD-AEQNVSIILNGTESELKFLTGNPESKDELE------QADAFLVVYSCIDKESFT 318

  Fly  1098 AAERVLQYLKENEMLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIETSSGLDHNVDEL 1162
            .|:::|..|::.::|..|..||||||.||.|.|.|:.|.|:.||.....||||.|.|::||.|||
  Fly   319 RAKQILSRLQDMDLLRHRPTILVANKIDLARSRAVSAQDGKCVACTFGAKFIEVSVGINHNCDEL 383

  Fly  1163 LVGIVAQVKLNPQRLRLLTELELQRLNLQSTIQKHRGMHLQ-TRRMVRQMSVCQGDEEIFDGG 1224
            |.|.:.|::|...:::|       :||.:.:..|.:....: |.....:...|..|.:..|||
  Fly   384 LAGTLTQIRLKKDQVQL-------QLNPKKSKDKDKNKFKENTNIETVETDNCLTDLKADDGG 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 Amelogenin <477..>550 CDD:197891
RGK 1008..>1175 CDD:206715 70/167 (42%)
Rgk3NP_001286670.1 P-loop containing Nucleoside Triphosphate Hydrolases 235..>396 CDD:476819 70/167 (42%)
Blue background indicates that the domain is not in the aligned region.

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