DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42541 and Y52B11A.4

DIOPT Version :9

Sequence 1:NP_996345.3 Gene:CG42541 / 31344 FlyBaseID:FBgn0260658 Length:1418 Species:Drosophila melanogaster
Sequence 2:NP_001379254.1 Gene:Y52B11A.4 / 173003 WormBaseID:WBGene00013124 Length:467 Species:Caenorhabditis elegans


Alignment Length:390 Identity:100/390 - (25%)
Similarity:168/390 - (43%) Gaps:55/390 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   831 STDSPSPVSMIPSNQQKQQQQLLQLQLQQEQQHLPTHLPMKRERGVGESSGASTSGTAIAELASS 895
            |.|..:..::|.::...|..:....:||:.:...|..:...|............:...:.::.:|
 Worm    12 SPDDIASGNVIYTSMTPQIMRRCHPRLQEVRSFDPMLVAQLRTDSANRELLTGDNYLGVTDMRNS 76

  Fly   896 VVLATQSG-----KPMTERQRL---------RTSSMPAESRRP-----RLAEMRRSAIHAGDP-- 939
            ..:|....     |||.|.:|:         |..|.|..||||     |:.|.|........|  
 Worm    77 TTVARSQSFKHRPKPMVEVRRMAIDDVGPHERRRSTPTVSRRPSLQKSRIMEPRTDVWPEAKPIG 141

  Fly   940 ----------DMTYYRLRSFSITSHG-ICNLGDSLRSRRSRSINS-------VTSTGTSNSGVDR 986
                      ...|.|:|.|.|...| :.:.|||.|.:|:.:..|       ..|..|.::...|
 Worm   142 LEERFLKLPDSEDYTRVRQFKIDEKGAVVSRGDSFRRKRTPTYKSDKSPSPFPVSVSTDSARGSR 206

  Fly   987 HNSNASG----------ASGEVIDGDPNVPAYKIAMLGASGVGKTTLTYQFTTSDYICAYDLSLD 1041
            ..|.||.          ...|:.:...:...|||.::|.:|.||::|..|..||:|..|:...: 
 Worm   207 SESEASEPLISDDVAKMTVNEMTNASTSHKTYKIYVVGDTGTGKSSLISQLITSEYKNAFADEI- 270

  Fly  1042 DDYGQKTVSVLVDNIETDLEIIDHPACEMSTEAFCATYNIDLFVVVYSVIDRNTFAAAERVLQYL 1106
            .|| :.|||:.:..:|.||...:   .:||...: .|..|..|:||||:..::::..|...|:.:
 Worm   271 QDY-ENTVSICIGGVECDLVFFE---SDMSDPCW-LTNEIHAFLVVYSIDSKSSWKQAMVALEMI 330

  Fly  1107 KENEMLLSRGAILVANKTDLQRHRVVTRQMGRKVAKEIACKFIETSSGLDHNVDELLVGIVAQVK 1171
            ::.....:...::..||.||:|.|.||:|..|.....:..:..|.|..|||:||:||||:||:::
 Worm   331 RDRPGTRNLPTLVAGNKIDLERKRTVTKQEVRAAKAAMGFEHFEISVALDHDVDDLLVGLVAEIQ 395

  Fly  1172  1171
             Worm   396  395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42541NP_996345.3 RGK 1008..>1175 CDD:206715 55/164 (34%)
small_GTPase 1008..1171 CDD:197466 55/162 (34%)
Y52B11A.4NP_001379254.1 P-loop_NTPase 238..>394 CDD:422963 55/161 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I4492
eggNOG 1 0.900 - - E2759_KOG0395
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14532
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45775
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.910

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