DRSC/TRiP Functional Genomics Resources

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Protein Alignment HIP-R and Sgt

DIOPT Version :9

Sequence 1:NP_001014719.2 Gene:HIP-R / 31335 FlyBaseID:FBgn0029676 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001246058.1 Gene:Sgt / 35052 FlyBaseID:FBgn0032640 Length:331 Species:Drosophila melanogaster


Alignment Length:362 Identity:73/362 - (20%)
Similarity:127/362 - (35%) Gaps:80/362 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 MP---QLQFVK---DFVEKFGGTVPPGQFNGGSAGGKC-----PFGGVAGAKANEPANAPED--- 79
            ||   |..||:   |:::|.|..:.|.|........:|     ..|....|   .||.|.|:   
  Fly     1 MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVEA---APAAAGEEQAT 62

  Fly    80 SEDEKSLSDPESD-VELDMEGV------IEADSDPAQPMGNYSKKATEEEVEQASELRAQAASAY 137
            ::...:.|.|:.| |.....|:      :..:.|..:...:...:...|.:..|..::.:.....
  Fly    63 TQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFELFQSLYTERNPESLALAESIKNEGNRLM 127

  Fly   138 GQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALELNSDLAAGYKFRGR 202
            .:.|::||:..|.:||...|.|.:|:..|..|.::|.:....:.||..||..|::.:..|...|.
  Fly   128 KENKYNEALLQYNRAIAFDPKNPIFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGV 192

  Fly   203 ARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPNAKKIEQHRLKQERRQAERKIKERQRDQR 267
            |...:|:||.|.....:|.:|:.|.|.                             .|......|
  Fly   193 AYSNMGNFEKAEQAYAKAIELEPDNEV-----------------------------YKSNLEAAR 228

  Fly   268 RARKEQEKHNASSGGSSGEFSGGNPGNGNM-SDILGAMSDPEVSAAIQDILSNPGNITKYASNPK 331
            .||.:.                  |..|.: .|::..:|.|.|.....:...:...:.....||.
  Fly   229 NARNQP------------------PQTGRLREDLINMLSQPMVRNLFNNAEIDVEQLLSMLQNPM 275

  Fly   332 IYNLIKKIVPGGD--------VGAAFGQAGEKAGKPS 360
            |.|.|::...||:        |...:....:..|.|:
  Fly   276 IMNTIRQQFGGGNAPTLPNDMVQMIYNMTSQLTGFPN 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HIP-RNP_001014719.2 Hip_N 10..47 CDD:271228 8/23 (35%)
TPR_11 125..190 CDD:290150 17/64 (27%)
TPR_2 126..159 CDD:285020 8/32 (25%)
TPR repeat 126..154 CDD:276809 6/27 (22%)
TPR repeat 159..189 CDD:276809 9/29 (31%)
TPR repeat 194..222 CDD:276809 8/27 (30%)
STI1 299..336 CDD:128966 8/36 (22%)
SgtNP_001246058.1 SGTA_dimer 9..>48 CDD:293154 9/38 (24%)
TPR_11 116..177 CDD:290150 15/60 (25%)
TPR_2 116..149 CDD:285020 8/32 (25%)
TPR repeat 116..144 CDD:276809 6/27 (22%)
TPR_17 139..170 CDD:290167 9/30 (30%)
TPR repeat 149..179 CDD:276809 9/29 (31%)
TPR_16 156..218 CDD:290168 18/61 (30%)
TPR_1 184..217 CDD:278916 9/32 (28%)
TPR repeat 184..212 CDD:276809 8/27 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462414
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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